Accessibility statement



  • Presslee, S., Penkman, K., Fischer, R., Richards-Slidel, E., Southon, J., Hospitaleche, C. A., Collins, M., & MacPhee, R. (2021). Assessment of different screening methods for selecting palaeontological bone samples for peptide sequencing. Journal of Proteomics, 230, 103986. 
  • Richards, S.-J., Keenan, T., Vendeville, J.-B., Wheatley, D. E., Chidwick, H., Budhadev, D., Council, C. E., Webster, C. S., Ledru, H., Baker, A. N., Walker, M., Galan, M. C., Linclau, B., Fascione, M. A., & Gibson, M. I. (2021). Introducing affinity and selectivity into galectin-targeting nanoparticles with fluorinated glycan ligands. Chemical Science, 12(3), 905–910. 
  • Hauser, J. R., Bergström, E. T., Kulak, A. N., Warriner, S. L., Thomas‐Oates, J., & Bon, R. S. (2021). Pyrene Tags for the Detection of Carbohydrates by Label‐Assisted Laser Desorption/Ionisation Mass Spectrometry**. ChemBioChem, cbic.202000721. 


  • Brabham, R. L., Keenan, T., Husken, A., Bilsborrow, J., McBerney, R., Kumar, V., Turnbull, W. B., & Fascione, M. A. (2020). Rapid sodium periodate cleavage of an unnatural amino acid enables unmasking of a highly reactive α-oxo aldehyde for protein bioconjugation. Organic and Biomolecular Chemistry, 18(21), 4000–4003. 
  • Flack, E. K. P., Chidwick, H. S., Guchhait, G., Keenan, T., Budhadev, D., Huang, K., Both, P., Mas Pons, J., Ledru, H., Rui, S., Stafford, G. P., Shaw, J. G., Galan, M. C., Flitsch, S., Thomas, G. H., & Fascione, M. A. (2020). Biocatalytic Transfer of Pseudaminic Acid (Pse5Ac7Ac) Using Promiscuous Sialyltransferases in a Chemoenzymatic Approach to Pse5Ac7Ac-Containing Glycosides. ACS Catalysis, 10(17), 9986–9993. 
  • Keenan, T., Parmeggiani, F., Malassis, J., Fontenelle, C. Q., Vendeville, J. B., Offen, W., Both, P., Huang, K., Marchesi, A., Heyam, A., Young, C., Charnock, S. J., Davies, G. J., Linclau, B., Flitsch, S. L., & Fascione, M. A. (2020). Profiling Substrate Promiscuity of Wild-Type Sugar Kinases for Multi-fluorinated Monosaccharides. Cell Chemical Biology, 27(9), 1199-1206.e5. 
  • Flack, E. K. P., Chidwick, H. S., Guchhait, G., Keenan, T., Budhadev, D., Huang, K., Both, P., Mas Pons, J., Ledru, H., Rui, S., Stafford, G. P., Shaw, J. G., Galan, M. C., Flitsch, S., Thomas, G. H., & Fascione, M. A. (2020). Biocatalytic Transfer of Pseudaminic Acid (Pse5Ac7Ac) Using Promiscuous Sialyltransferases in a Chemoenzymatic Approach to Pse5Ac7Ac-Containing Glycosides. ACS Catalysis, 10(17), 9986–9993. 
  • Cuetos, A., Iglesias-Fernández, J., Danesh-Azari, H.-R., Zukic, E., Dowle, A., Osuna, S., & Grogan, G. (2020). Mutational Analysis of Linalool Dehydratase Isomerase Suggests That Alcohol and Alkene Transformations Are Catalyzed Using Noncovalent Mechanisms. ACS Catalysis, 10(19), 11136–11146. 
  • Souter, P., Vaughan, J., Butcher, K., Dowle, A., Cunningham, J., Dodd, J., Hall, M., Wilson, D., Horner, A., & Genever, P. (2020). Identification of mesenchymal stromal cell survival responses to antimicrobial silver ion concentrations released from orthopaedic implants. Scientific Reports, 10(1). 
  • Ferreira, T. R., Dowle, A. A., Parry, E., Alves-Ferreira, E. V. C., Hogg, K., Kolokousi, F., Larson, T. R., Plevin, M. J., Cruz, A. K., & Walrad, P. B. (2020). PRMT7 regulates RNA-binding capacity and protein stability in Leishmania parasites. Nucleic Acids Research, 48(10), 5511–5526. 
  • Lia, A., Dowle, A., Taylor, C., Santino, A., & Roversi, P. (2020). Partial catalytic Cys oxidation of human GAPDH to Cys-sulfonic acid. Wellcome Open Research, 5, 114. 
  • Raghavendran, V., Webb, J. P., Cartron, M. L., Springthorpe, V., Larson, T. R., Hines, M., Mohammed, H., Zimmerman, W. B., Poole, R. K., & Green, J. (2020). A microbubble-sparged yeast propagation-fermentation process for bioethanol production. Biotechnology for Biofuels, 13(1), 104. 
  • Cuetos, A., Iglesias-Fernández, J., Danesh-Azari, H.-R., Zukic, E., Dowle, A., Osuna, S., & Grogan, G. (2020). Mutational Analysis of Linalool Dehydratase Isomerase Suggests That Alcohol and Alkene Transformations Are Catalyzed Using Noncovalent Mechanisms. ACS Catalysis, 10(19), 11136–11146. 
  • Sturm, S., Dowle, A., Audsley, N., & Isaac, R. E. (2020). The structure of the Drosophila melanogaster sex peptide: Identification of hydroxylated isoleucine and a strain variation in the pattern of amino acid hydroxylation. Insect Biochemistry and Molecular Biology, 124, 103414. 
  • Hulatt, C. J., Smolina, I., Dowle, A., Kopp, M., Vasanth, G. K., Hoarau, G. G., Wijffels, R. H., & Kiron, V. (2020). Proteomic and Transcriptomic Patterns during Lipid Remodeling in Nannochloropsis gaditana. International Journal of Molecular Sciences, 21(18), 6946. 
  • Stojanovski, D., Živaljević, I., Dimitrijević, V., Dunne, J., Evershed, R. P., Balasse, M., Dowle, A., Hendy, J., McGrath, K., Fischer, R., Speller, C., Jovanović, J., Casanova, E., Knowles, T., Balj, L., Naumov, G., Putica, A., Starović, A., & Stefanović, S. (2020). Living off the land: Terrestrial-based diet and dairying in the farming communities of the Neolithic Balkans. PLOS ONE, 15(8), e0237608. 
  • Cracknell, T., Mannsverk, S., Nichols, A., Dowle, A., & Blanco, G. (2020). Proteomic resolution of IGFN1 complexes reveals a functional interaction with the actin nucleating protein COBL. Experimental Cell Research, 395(2), 112179. 
  • Calderini, D. F., Castillo, F. M., Arenas‐M, A., Molero, G., Reynolds, M. P., Craze, M., Bowden, S., Milner, M. J., Wallington, E. J., Dowle, A., Gomez, L. D., & McQueen‐Mason, S. J. (2020). Overcoming the trade‐off between grain weight and number in wheat by the ectopic expression of expansin in developing seeds leads to increased yield potential. New Phytologist, nph.17048. 
  • Drieu, L., Rageot, M., Wales, N., Stern, B., Lundy, J., Zerrer, M., Gaffney, I., Bondetti, M., Spiteri, C., Thomas-Oates, J., & Craig, O. E. (2020). Is it possible to identify ancient wine production using biomolecular approaches? In Science and Technology of Archaeological Research (Vol. 6, Issue 1, pp. 16–29). Routledge. 
  • Olea‐Ozuna, R. J., Poggio, S., EdBergström, Quiroz‐Rocha, E., García‐Soriano, D. A., Sahonero‐Canavesi, D. X., Padilla‐Gómez, J., Martínez‐Aguilar, L., López‐Lara, I. M., Thomas‐Oates, J., & Geiger, O. (2020). Five structural genes required for ceramide synthesis in Caulobacter and for bacterial survival. Environmental Microbiology, 1462-2920.15280. 
  • Conti, M. L. G., Bates, M. R., Preece, R. C., Penkman, K. E. H., & Keely, B. J. (2020). Molecular fossils as a tool for tracking Holocene sea‐level change in the Loch of Stenness, Orkney. Journal of Quaternary Science, jqs.3238. 


  • Webb, J., Springthorpe, V., Rossoni, L., Minde, D.-P., Langer, S., Walker, H., … Green, J. (2019). Systems Analyses Reveal the Resilience of Escherichia coli Physiology during Accumulation and Export of the Nonnative Organic Acid Citramalate . MSystems, 4(4).
  • Liang, J., Klingl, A., Lin, Y. Y., Boul, E., Thomas-Oates, J., & Marín, M. (2019). A subcompatible rhizobium strain reveals infection duality in Lotus. Journal of Experimental Botany, 70(6), 1903–1913.
  • Demarchi, B., Presslee, S., Gutiérrez-Zugasti, I., González-Morales, M., Marín-Arroyo, A. B., Straus, L. G., & Fischer, R. (2019). Birds of prey and humans in prehistoric Europe: A view from El Mirón Cave, Cantabria (Spain). Journal of Archaeological Science: Reports, 24, 244–252.
  • Keenan, T., Dowle, A., Bates, R., & Smith, M. C. M. (2019). Characterization of the streptomyces coelicolor glycoproteome reveals glycoproteins important for cell wall biogenesis. MBio, 10(3).
  • Wong, N. G. K., Berenbeim, J. A., & Dessent, C. E. H. (2019). Direct Observation of Photochemical Free Radical Production from the Sunscreen 2‐Phenylbenzimidazole‐5‐Sulfonic Acid via Laser‐Interfaced Mass Spectrometry. ChemPhotoChem, 3(12), 1231–1237.
  • Fowler, C. A., Sabbadin, F., Ciano, L., Hemsworth, G. R., Elias, L., Bruce, N., … Walton, P. H. (2019). Discovery, activity and characterisation of an AA10 lytic polysaccharide oxygenase from the shipworm symbiont Teredinibacter turnerae. Biotechnology for Biofuels, 12(1).
  • Pinheiro, C., Dickinson, E., Marriott, A., Ribeiro, I. C., Pintó-Marijuan, M., António, C., … Wilson, J. (2019). Distinctive phytohormonal and metabolic profiles of Arabidopsis thaliana and Eutrema salsugineum under similar soil drying. Planta, 249(5), 1417–1433.
  • Schröder, S. P., de Boer, C., McGregor, N. G. S., Rowland, R. J., Moroz, O., Blagova, E., … Overkleeft, H. S. (2019). Dynamic and Functional Profiling of Xylan-Degrading Enzymes in Aspergillus Secretomes Using Activity-Based Probes. ACS Central Science, 5(6), 1067–1078.
  • Paradisi, A., Johnston, E. M., Tovborg, M., Nicoll, C. R., Ciano, L., Dowle, A., … Walton, P. H. (2019). Formation of a Copper(II)-Tyrosyl Complex at the Active Site of Lytic Polysaccharide Monooxygenases following Oxidation by H2O2. Journal of the American Chemical Society.
  • Witkos, T. M., Chan, W. L., Joensuu, M., Rhiel, M., Pallister, E., Thomas-Oates, J., … Lowe, M. (2019). GORAB scaffolds COPI at the trans-Golgi for efficient enzyme recycling and correct protein glycosylation. Nature Communications, 10(1), 127.
  • Simpson, J. P., Fascione, M., Bergström, E., Wilson, J., Collins, M. J., Penkman, K. E. H., & Thomas‐Oates, J. (2019). Ionisation bias undermines the use of MALDI for estimating peptide deamidation: synthetic peptide studies demonstrate ESI gives more reliable response ratios. Rapid Communications in Mass Spectrometry, rcm.8441.
  • Singh, R., Bennett, J. P., Gupta, M., Sharma, M., Eqbal, D., Alessi, A. M., … Yazdani, S. S. (2019). Mining the biomass deconstructing capabilities of rice yellow stem borer symbionts. Biotechnology for Biofuels, 12(1), 265.
  • Fisher, P., Spencer, H., Thomas-Oates, J., Wood, A. J., & Ungar, D. (2019). Modeling Glycan Processing Reveals Golgi-Enzyme Homeostasis upon Trafficking Defects and Cellular Differentiation. Cell Reports, 27(4), 1231–1243.e6.
  • Cercola, R., Matthews, E., & Dessent, C. E. H. (2019). Near-threshold electron transfer in anion-nucleobase clusters: does the identity of the anion matter? Molecular Physics, 117(21), 3001–3010.
  • High, K. E., Ashton, P. D., Nelson, M., Rylott, E. L., Thomas-Oates, J. E., & Hodson, M. E. (2019). New approaches using mass spectrometry to investigate changes to cytokinin and abscisic acid (ABA) concentrations in soil. Soil Biology and Biochemistry, 135, 108–116.
  • Presslee, S., Slater, G. J., Pujos, F., Forasiepi, A. M., Fischer, R., Molloy, K., … MacPhee, R. D. E. (2019). Palaeoproteomics resolves sloth relationships. Nature Ecology and Evolution, 3(7), 1121–1130.
  • Ferreira, T. R., Dowle, A. A., Parry, E., Alves-Ferreira, E. V. C., Kolokousi, F., Larson, T. R., … Walrad, P. B. (2019). Post-translational epigenetics: PRMT7 regulates RNA-binding capacity and protein stability to control Leishmania parasite virulence. BioRxiv, 736736.
  • Digomann, D., Kurth, I., Tyutyunnykova, A., Chen, O., Löck, S., Gorodetska, I., … Dubrovska, A. (2019). The CD98 heavy chain is a marker and regulator of head and neck squamous cell carcinoma radiosensitivity. Clinical Cancer Research, clincanres.2951.2018.
  • De Pablos, L. M., Ferreira, T. R., Dowle, A. A., Forrester, S., Parry, E., Newling, K., & Walrad, P. B. (2019). The mRNA-bound Proteome of Leishmania mexicana: Novel genetic insight into an ancient parasite*. Molecular and Cellular Proteomics, 18(7), 1271–1284.
  • Fisher, P., Thomas-Oates, J., Wood, A. J., & Ungar, D. (2019). The N-Glycosylation Processing Potential of the Mammalian Golgi Apparatus. Frontiers in Cell and Developmental Biology, 7.



  • Wilson, K. M., Jagger, A. M., Walker, M., Seinkmane, E., Fox, J. M., Kröger, R., … Ungar, D. (2018). Glycans modify mesenchymal stem cell differentiation to impact on the function of resulting osteoblasts. Journal of Cell Science, 131(4), jcs209452.
  • Oldenkamp, R., Hoeks, S., Čengić, M., Barbarossa, V., Burns, E. E., Boxall, A. B. A., & Ragas, A. M. J. (2018). A High-Resolution Spatial Model to Predict Exposure to Pharmaceuticals in European Surface Waters: EPiE. Environmental Science and Technology, 52(21), 12494–12503. 
  • Sabbadin, F., Hemsworth, G. R., Ciano, L., Henrissat, B., Dupree, P., Tryfona, T., … McQueen-Mason, S. J. (2018). An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion. Nature Communications, 9(1), 756. 
  • Burns, E. E., Carter, L. J., Snape, J., Thomas-Oates, J., & Boxall, A. B. A. (2018, May). Application of prioritization approaches to optimize environmental monitoring and testing of pharmaceuticals. Journal of Toxicology and Environmental Health - Part B: Critical Reviews. Taylor & Francis. 
  • Alessi, A. M., Bird, S. M., Oates, N. C., Li, Y., Dowle, A. A., Novotny, E. H., … Bruce, N. C. (2018). Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies. Biotechnology for Biofuels, 11(1), 166. 
  • Smith, R. K., Stacey, R. J., Bergström, E., & Thomas-Oates, J. (2018). Detection of opium alkaloids in a Cypriot base-ring juglet. Analyst, 143(21), 5127–5136. 
  • Besser, K., Malyon, G. P., Eborall, W. S., Paro da Cunha, G., Filgueiras, J. G., Dowle, A., … McQueen-Mason, S. J. (2018). Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans. Nature Communications, 9(1), 5125. 
  • Mays, S., Roberts, D., Marshall, P., Pike, A. W. G., van Heekeren, V., Bronk Ramsey, C., … Bedford, J. (2018). Lives before and after Stonehenge: An osteobiographical study of four prehistoric burials recently excavated from the Stonehenge World Heritage Site. Journal of Archaeological Science: Reports, 20, 692–710. 
  • Burns, E. E., & Boxall, A. B. A. (2018, November 1). Microplastics in the aquatic environment: Evidence for or against adverse impacts and major knowledge gaps. Environmental Toxicology and Chemistry. John Wiley & Sons, Ltd. 
  • Brabham, R. L., Spears, R. J., Walton, J., Tyagi, S., Lemke, E. A., & Fascione, M. A. (2018). Palladium-unleashed proteins: Gentle aldehyde decaging for site-selective protein modification. Chemical Communications, 54(12), 1501–1504. 
  • Becerra-Rivera, V. A., Bergström, E., Thomas-Oates, J., & Dunn, M. F. (2018). Polyamines are required for normal growth in sinorhizobium meliloti. Microbiology (United Kingdom), 164(4), 600–613. 
  • Matthews, E., Cercola, R., & Dessent, C. E. H. (2018). Protomer-dependent electronic spectroscopy and photochemistry of the model flavin chromophore alloxazine. Molecules, 23(8), 2036. 
  • Spears, R. J., Brabham, R. L., Budhadev, D., Keenan, T., McKenna, S., Walton, J., … Fascione, M. A. (2018). Site-selective C-C modification of proteins at neutral pH using organocatalyst-mediated cross aldol ligations. Chemical Science, 9(25), 5585–5593. 
  • Urresti, S., Cartmell, A., Liu, F., Walton, P. H., & Davies, G. J. (2018). Structural studies of the unusual metal-ion site of the GH124 endoglucanase from Ruminiclostridium thermocellum. Acta Crystallographica Section F: Structural Biology Communications, 74(8), 496–505. 
  • Burns, E. E., Carter, L. J., Kolpin, D. W., Thomas-Oates, J., & Boxall, A. B. A. (2018). Temporal and spatial variation in pharmaceutical concentrations in an urban river system. Water Research, 137, 72–85. 
  • Paes, W., Dowle, A., Coldwell, J., Leech, A., Ganderton, T., & Brzozowski, A. (2018). The Chlamydia trachomatis PmpD adhesin forms higher order structures through disulphide-mediated covalent interactions. PLOS ONE, 13(6), e0198662. 
  • Bínová, E., Bína, D., Ashford, D. A., Thomas-Oates, J., & Nohýnková, E. (2017). Trehalose During Two Stress Responses in Acanthamoeba: Differentiation Between Encystation and Pseudocyst Formation. Protist, 168(6), 649–662. 
  • Sabbadin, F., Pesante, G., Elias, L., Besser, K., Li, Y., Steele-King, C., … McQueen-Mason, S. J. (2018). Uncovering the molecular mechanisms of lignocellulose digestion in shipworms. Biotechnology for Biofuels, 11(1), 59. 


  • Coverley, D., Higgins, G., West, D., Jackson, O. T., Dowle, A., Haslam, A., … White, J. (2017). A quantitative immunoassay for lung cancer biomarker CIZ1b in patient plasma. Clinical Biochemistry, 50(6), 336–343. 
  • Burns, E. E., Thomas-Oates, J., Kolpin, D. W., Furlong, E. T., & Boxall, A. B. . (2017). Are exposure predictions, used for the prioritization of pharmaceuticals in the environment, fit for purpose? Environmental Toxicology and Chemistry, 36(10), 2823–2832. 
  • Al-Khazrajy, O. S. A., & Boxall, A. B. A. (2017). Determination of pharmaceuticals in freshwater sediments using ultrasonic-assisted extraction with SPE clean-up and HPLC-DAD or LC-ESI-MS/MS detection. Analytical Methods, 9(28), 4190–4200. 
  • Skeene, K., Walker, M., Clarke, G., Bergström, E., Genever, P., Ungar, D., & Thomas-Oates, J. (2017). One Filter, One Sample, and the N - and O-Glyco(proteo)me: Toward a System to Study Disorders of Protein Glycosylation. Analytical Chemistry, 89(11), 5840–5849. 
  • Geoghegan, V., Stainton, K., Rainey, S. M., Ant, T. H., Dowle, A. A., Larson, T., … Sinkins, S. P. (2017). Perturbed cholesterol and vesicular trafficking associated with dengue blocking in Wolbachia-infected Aedes aegypti cells. Nature Communications, 8(1), 526. 
  • Cercola, R., Matthews, E., & Dessent, C. E. H. (2017). Photoexcitation of Adenosine 5′-Triphosphate Anions in Vacuo: Probing the Influence of Charge State on the UV Photophysics of Adenine. Journal of Physical Chemistry B, 121(22), 5553–5561. 
  • Bean, T. G., Arnold, K. E., Lane, J. M., Bergström, E., Thomas-Oates, J., Rattner, B. A., & Boxall, A. B. A. (2017). Predictive framework for estimating exposure of birds to pharmaceuticals. Environmental Toxicology and Chemistry, 36(9), 2335–2344. 
  • Paredi, G., Benoni, R., Pighini, G., Ronda, L., Dowle, A., Ashford, D., … Mozzarelli, A. (2017). Proteomics of Parma Dry-Cured Ham: Analysis of Salting Exudates. Journal of Agricultural and Food Chemistry, 65(30), 6307–6316. 
  • Alessi, A. M., Bird, S. M., Bennett, J. P., Oates, N. C., Li, Y., Dowle, A. A., … Bruce, N. C. (2017). Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities. Scientific Reports, 7(1), 2356. 
  • Raines, S. A., Hodgkinson, M. R., Dowle, A. A., & Pryor, P. R. (2017). The Salmonella effector SseJ disrupts microtubule dynamics when ectopically expressed in normal rat kidney cells. PLOS ONE, 12(2), e0172588. 
  • Bínová, E., Bína, D., Ashford, D. A., Thomas-Oates, J., & Nohýnková, E. (2017). Trehalose During Two Stress Responses in Acanthamoeba: Differentiation Between Encystation and Pseudocyst Formation. Protist, 168(6), 649–662. 


  • Grundy, H. H., Reece, P., Buckley, M., Solazzo, C. M., Dowle, A. A., Ashford, D., … Collins, M. J. (2016). A mass spectrometry method for the determination of the species of origin of gelatine in foods and pharmaceutical products. Food Chemistry, 190, 276–284. 
  • Dowle, A. A., Wilson, J., & Thomas, J. R. (2016). Comparing the Diagnostic Classification Accuracy of iTRAQ, Peak-Area, Spectral-Counting, and emPAI Methods for Relative Quantification in Expression Proteomics. Journal of Proteome Research, 15(10), 3550–3562. 
  • Marriott, A. S., Hunt, A. J., Bergström, E., Thomas-Oates, J., & Clark, J. H. (2016). Effect of rate of pyrolysis on the textural properties of naturally-templated porous carbons from alginic acid. Journal of Analytical and Applied Pyrolysis, 121, 62–66. 
  • Bean, T. G., Bergstrom, E., Thomas-Oates, J., Wolff, A., Bartl, P., Eaton, B., & Boxall, A. B. A. (2016). Evaluation of a Novel Approach for Reducing Emissions of Pharmaceuticals to the Environment. Environmental Management, 58(4), 707–720. 
  • Castangia, R., Hudson, S. R., Robinson, H. K., Flitsch, S. L., Thomas-Oates, J., & Routledge, A. (2016). Fabrication and Application of Isotopically Labelled Gold Arrays for Multiplexed Peptide Analysis. ChemBioChem, 17(21), 2007–2011. 
  • Wilson, K. M., Thomas-Oates, J. E., Genever, P. G., & Ungar, D. (2016). Glycan Profiling Shows Unvaried N-Glycomes in MSC Clones with Distinct Differentiation Potentials. Frontiers in Cell and Developmental Biology, 4, 52. 
  • Pires, V. M. R., Madeira, M. S., Dowle, A. A., Thomas, J., Almeida, A. M., & Prates, J. A. M. (2016). Increased intramuscular fat induced by reduced dietary protein in finishing pigs: Effects on the longissimus lumborum muscle proteome. Molecular BioSystems, 12(8), 2447–2457. 
  • Jorge, T. F., Rodrigues, J. A., Caldana, C., Schmidt, R., van Dongen, J. T., Thomas-Oates, J., & António, C. (2016, September 1). Mass spectrometry-based plant metabolomics: Metabolite responses to abiotic stress. Mass Spectrometry Reviews. Wiley-Blackwell. 
  • Dunning, C. J. R., Black, H. L., Andrews, K. L., Davenport, E. C., Conboy, M., Chawla, S., … Evans, G. J. O. (2016). Multisite tyrosine phosphorylation of the N-terminus of Mint1/X11α by Src kinase regulates the trafficking of amyloid precursor protein. Journal of Neurochemistry, 137(4), 518–527. 
  • Gorbanev, Y., O’Connell, D., & Chechik, V. (2016). Non-Thermal Plasma in Contact with Water: The Origin of Species. Chemistry - A European Journal, 22(10), 3496–3505. 
  • Demarchi, B., Hall, S., Roncal-Herrero, T., Freeman, C. L., Woolley, J., Crisp, M. K., … Collins, M. J. (2016). Protein sequences bound to mineral surfaces persist into deep time. ELife, 5, e17092. 
  • Hendy, J., Collins, M., Teoh, K. Y., Ashford, D. A., Thomas-Oates, J., Donoghue, H. D., … Buckley, M. (2016). The challenge of identifying tuberculosis proteins in archaeological tissues. Journal of Archaeological Science, 66, 146–153. 
  • Simpson, J. P., Penkman, K. E. H., Demarchi, B., Koon, H., Collins, M. J., Thomas-Oates, J., … Wilson, J. (2016). The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from bone. Journal of Archaeological Science, 69, 29–38. 
  • Matthews, E., Sen, A., Yoshikawa, N., Bergström, E., & Dessent, C. E. H. (2016). UV laser photoactivation of hexachloroplatinate bound to individual nucleobases: In vacuo as molecular level probes of a model photopharmaceutical. Physical Chemistry Chemical Physics, 18(22), 15143–15152. 


  • Welker, F., Collins, M. J., Thomas, J. A., Wadsley, M., Brace, S., Cappellini, E., … MacPhee, R. D. E. (2015). Ancient proteins resolve the evolutionary history of Darwin’s South American ungulates. Nature, 522(7554), 81–84. 
  • Fiddyment, S., Holsinger, B., Ruzzier, C., Devine, A., Binois, A., Albarella, U., … Collins, M. J. (2015). Animal origin of 13th-century uterine vellum revealed using noninvasive peptide fingerprinting. Proceedings of the National Academy of Sciences, 112(49), 15066–15071. 
  • Warinner, C., Hendy, J., Speller, C., Cappellini, E., Fischer, R., Trachsel, C., … Collins, M. J. (2015). Direct evidence of milk consumption from ancient human dental calculus. Scientific Reports, 4(1), 7104. 
  • Winzer, T., Kern, M., King, A. J., Larson, T. R., Teodor, R. I., Donninger, S. L., … Graham, I. A. (2015). Morphinan biosynthesis in opium poppy requires a P450-oxidoreductase fusion protein. Science, 349(6245), 309–312. 
  • Teasdale, M. D., van Doorn, N. L., Fiddyment, S., Webb, C. C., O’Connor, T., Hofreiter, M., … Bradley, D. G. (2015). Paging through history: parchment as a reservoir of ancient DNA for next generation sequencing. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 370(1660), 20130379. 
  • Hogg, K., Thomas, J., Ashford, D., Cartwright, J., Coldwell, R., Weston, D. J., … O’Toole, P. (2015). Quantification of proteins by flow cytometry: Quantification of human hepatic transporter P-gp and OATP1B1 using flow cytometry and mass spectrometry. Methods, 82, 38–46. 
  • Nelson, M., Yang, M., Dowle, A. A., Thomas, J. R., & Brackenbury, W. J. (2015). The sodium channel-blocking antiepileptic drug phenytoin inhibits breast tumour growth and metastasis. Molecular Cancer, 14(1), 13. 
  • Welker, F., Soressi, M., Rendu, W., Hublin, J. J., & Collins, M. (2015). Using ZooMS to identify fragmentary bone from the Late Middle/Early Upper Palaeolithic sequence of Les Cottés, France. Journal of Archaeological Science, 54, 279–286. 
  • Harvey, A. J. A., Sen, A., Yoshikawa, N., & Dessent, C. E. H. (2015). UV laser spectroscopy of mass-selected ionic liquid building blocks in the gas-phase. Chemical Physics Letters, 634, 216–220. 


  • Marriott, A. S., Bergström, E., Hunt, A. J., Thomas-Oates, J., & Clark, J. H. (2014). A natural template approach to mesoporous carbon spheres for use as green chromatographic stationary phases. RSC Adv., 4(1), 222–228.
  • Vaiglova, P., Bogaard, A., Collins, M., Cavanagh, W., Mee, C., Renard, J., … Fraser, R. (2014). An integrated stable isotope study of plants and animals from Kouphovouno, southern Greece: a new look at Neolithic farming. Journal of Archaeological Science, 42, 201–215.
  • Sen, A., & Dessent, C. E. H. (2014). Communication: Photoactivation of nucleobase bound platinum II metal complexes: Probing the influence of the nucleobase. The Journal of Chemical Physics, 141(24), 241101.
  • Carter, L. J., Garman, C. D., Ryan, J., Dowle, A., Bergström, E., Thomas-Oates, J., & Boxall, A. B. A. (2014). Fate and Uptake of Pharmaceuticals in Soil–Earthworm Systems. Environmental Science & Technology, 48(10), 5955–5963.
  • Abdul Rahman, S., Bergström, E., Watson, C. J., Wilson, K. M., Ashford, D. A., Thomas, J. R., … Thomas-Oates, J. E. (2014). Filter-Aided N -Glycan Separation (FANGS): A Convenient Sample Preparation Method for Mass Spectrometric N -Glycan Profiling. Journal of Proteome Research, 13(3), 1167–1176.
  • Österman, J., Marsh, J., Laine, P. K., Zeng, Z., Alatalo, E., Sullivan, J. T., … Lindström, K. (2014). Genome sequencing of two Neorhizobium galegae strains reveals a noeT gene responsible for the unusual acetylation of the nodulation factors. BMC Genomics, 15(1), 500.
  • Marriott, A. S., Hunt, A. J., Bergström, E., Wilson, K., Budarin, V. L., Thomas-Oates, J., … Brydson, R. (2014). Investigating the structure of biomass-derived non-graphitizing mesoporous carbons by electron energy loss spectroscopy in the transmission electron microscope and X-ray photoelectron spectroscopy. Carbon, 67, 514–524.
  • Sen, A., & Dessent, C. E. H. (2014). Mapping the UV Photophysics of Platinum Metal Complexes Bound to Nucleobases: Laser Spectroscopy of Isolated Uracil·Pt(CN) 4 2– and Uracil·Pt(CN) 6 2– Complexes. The Journal of Physical Chemistry Letters, 5(19), 3281–3285.
  • Bromfield, S. M., Posocco, P., Chan, C. W., Calderon, M., Guimond, S. E., Turnbull, J. E., … Smith, D. K. (2014). Nanoscale self-assembled multivalent (SAMul) heparin binders in highly competitive, biologically relevant, aqueous media. Chemical Science, 5(4), 1484.
  • Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., … Cappellini, E. (2014). Pathogens and host immunity in the ancient human oral cavity. Nature Genetics, 46(4), 336–344.
  • Ives, J. W., Froese, D., Collins, M., & Brock, F. (2014). Radiocarbon and Protein Analyses Indicate an Early Holocene Age for the Osseous Rod from Grenfell, Saskatchewan, Canada. American Antiquity, 79(4), 782–793.
  • Sen, A., Luxford, T. F. M., Yoshikawa, N., & Dessent, C. E. H. (2014). Solvent evaporation versus proton transfer in nucleobase–Pt(CN)4,62− dianion clusters: a collisional excitation and electronic laser photodissociation spectroscopy study. Physical Chemistry Chemical Physics, 16(29), 15490.
  • Solazzo, C., Rogers, P. W., Weber, L., Beaubien, H. F., Wilson, J., & Collins, M. (2014). Species identification by peptide mass fingerprinting (PMF) in fibre products preserved by association with copper-alloy artefacts. Journal of Archaeological Science, 49, 524–535.


  • Luxford, T. F. M., Milner, E. M., Yoshikawa, N., Bullivant, C., & Dessent, C. E. H. (2013). Complexation of carboxylate anions with the arginine gas-phase amino acid: Effects of chain length on the geometry of extended ion binding. Chemical Physics Letters, 577, 1–5. 
  • Guasch-Vidal, B., Estévez, J., Dardanelli, M. S., Soria-Díaz, M. E., de Córdoba, F. F., Balog, C. I. A., … van Brussel, A. A. N. (2013). High NaCl Concentrations Induce the nod Genes of Rhizobium tropici CIAT899 in the Absence of Flavonoid Inducers. Molecular Plant-Microbe Interactions, 26(4), 451–460. 
  • Hamilton, J. F., Alfarra, M. R., Robinson, N., Ward, M. W., Lewis, A. C., McFiggans, G. B., … Allan, J. D. (2013). Linking biogenic hydrocarbons to biogenic aerosol in the Borneo rainforest. Atmospheric Chemistry and Physics, 13(22), 11295–11305. 
  • Hamilton, J. F., Baeza-Romero, M. T., Finessi, E., Rickard, A. R., Healy, R. M., Peppe, S., … Muñoz, A. (2013). Online and offline mass spectrometric study of the impact of oxidation and ageing on glyoxal chemistry and uptake onto ammonium sulfate aerosols. Faraday Discussions, 165(0), 447. 
  • Alfarra, M. R., Good, N., Wyche, K. P., Hamilton, J. F., Monks, P. S., Lewis, A. C., & McFiggans, G. (2013). Water uptake is independent of the inferred composition of secondary aerosols derived from multiple biogenic VOCs. Atmospheric Chemistry and Physics, 13(23), 11769–11789. 


  • Milner, E. M., Nix, M. G. D., & Dessent, C. E. H. (2012). Collision-Induced Dissociation of Halide Ion–Arginine Complexes: Evidence for Anion-Induced Zwitterion Formation in Gas-Phase Arginine. The Journal of Physical Chemistry A, 116(2), 801–809. 
  • Hudson, S. R., Chadbourne, F. L., Helliwell, P. A., Pflimlin, E., Thomas-Oates, J. E., & Routledge, A. (2012). Evaluation of a Solid-Supported Tagging Strategy for Mass Spectrometric Analysis of Peptides. ACS Combinatorial Science, 14(2), 97–100. 
  • Bínová, E., Klieščiková, J., Ashford, D. A., Thomas-Oates, J., & Nohýnková, E. (2012). Mannitol is not involved in protective reactions of Acanthamoeba. Molecular and Biochemical Parasitology, 184(2), 118–121. 
  • Thompson, A. J., Williams, R. J., Hakki, Z., Alonzi, D. S., Wennekes, T., Gloster, T. M., … Davies, G. J. (2012). Structural and mechanistic insight into N-glycan processing by endo-α-mannosidase. Proceedings of the National Academy of Sciences of the United States of America, 109(3), 781–786. 
  • Alfarra, M. R., Hamilton, J. F., Wyche, K. P., Good, N., Ward, M. W., Carr, T., … McFiggans, G. B. (2012). The effect of photochemical ageing and initial precursor concentration on the composition and hygroscopic properties of β-caryophyllene secondary organic aerosol. Atmospheric Chemistry and Physics, 12(14), 6417–6436. 


  • Castro-Borges, W., Simpson, D. M., Dowle, A., Curwen, R. S., Thomas-Oates, J., Beynon, R. J., & Wilson, R. A. (2011). Abundance of tegument surface proteins in the human blood fluke Schistosoma mansoni determined by QconCAT proteomics. Journal of Proteomics, 74(9), 1519–1533. 
  • Barnard, A., Posocco, P., Pricl, S., Calderon, M., Haag, R., Hwang, M. E., … Smith, D. K. (2011). Degradable Self-Assembling Dendrons for Gene Delivery: Experimental and Theoretical Insights into the Barriers to Cellular Uptake. Journal of the American Chemical Society, 133(50), 20288–20300. 
  • Castro-Borges, W., Dowle, A., Curwen, R. S., Thomas-Oates, J., & Wilson, R. A. (2011). Enzymatic Shaving of the Tegument Surface of Live Schistosomes for Proteomic Analysis: A Rational Approach to Select Vaccine Candidates. PLoS Neglected Tropical Diseases, 5(3), e993. 
  • O’Connor, S., Ali, E., Al-Sabah, S., Anwar, D., Bergström, E., Brown, K. A., … O’Connor, T. (2011). Exceptional preservation of a prehistoric human brain from Heslington, Yorkshire, UK. Journal of Archaeological Science, 38(7), 1641–1654. 
  • Pinheiro, C., António, C., Ortuño, M. F., Dobrev, P. I., Hartung, W., Thomas-Oates, J., … Wilson, J. C. (2011). Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses. Journal of Experimental Botany, 62(14), 4965–4974. 
  • Firth, A. G., Wilson, K., Baumann, C. G., & Fairlamb, I. J. S. (2011). Interrogation of a Sonogashira Cross-Coupling of 8-Bromoguanosine with Phenylacetylene on Amberlite: Evidence for Pd/Cu Ion Binding and Propagation of Pd/Cu Nanoparticles. Nucleosides, Nucleotides and Nucleic Acids, 30(2), 168–184. 
  • Hamilton, J. F., Rami Alfarra, M., Wyche, K. P., Ward, M. W., Lewis, A. C., McFiggans, G. B., … Purvis, R. M. (2011). Investigating the use of secondary organic aerosol as seed particles in simulation chamber experiments. Atmospheric Chemistry and Physics, 11(12), 5917–5929. 
  • Thompson, A. J., Williams, R. J., Hakki, Z., Alonzi, D. S., Wennekes, T., Gloster, T. M., … Davies, G. J. (2012). Structural and mechanistic insight into N-glycan processing by endo-α-mannosidase. Proceedings of the National Academy of Sciences of the United States of America, 109(3), 781–786. 
  • González-Silva, N., López-Lara, I. M., Reyes-Lamothe, R., Taylor, A. M., Sumpton, D., Thomas-Oates, J., & Geiger, O. (2011). The Dioxygenase-Encoding olsD Gene from Burkholderia cenocepacia Causes the Hydroxylation of the Amide-Linked Fatty Acyl Moiety of Ornithine-Containing Membrane Lipids. Biochemistry, 50(29), 6396–6408. 


  • Cappellini, E., Gilbert, M. T. P., Geuna, F., Fiorentino, G., Hall, A., Thomas-Oates, J., … Collins, M. J. (2010). A multidisciplinary study of archaeological grape seeds. Naturwissenschaften, 97(2), 205–217. 
  • Boutain, M., Duckett, S. B., Dunne, J. P., Godard, C., Hernández, J. M., Holmes, A. J., … López-Serrano, J. (2010). A parahydrogen based NMR study of Pt catalysed alkyne hydrogenation. Dalton Transactions, 39(14), 3495. 
  • Deitrich, C. L., Braukmann, S., Raab, A., Munro, C., Pioselli, B., Krupp, E. M., … Feldmann, J. (2010). Absolute quantification of superoxide dismutase (SOD) using species-specific isotope dilution analysis. Analytical and Bioanalytical Chemistry, 397(8), 3515–3524. 
  • Songsrirote, K., Li, Z., Ashford, D., Bateman, A., & Thomas-Oates, J. (2010). Development and application of mass spectrometric methods for the analysis of progranulin N-glycosylation. Journal of Proteomics, 73(8), 1479–1490. 
  • Buckley, M., Whitcher Kansa, S., Howard, S., Campbell, S., Thomas-Oates, J., & Collins, M. (2010). Distinguishing between archaeological sheep and goat bones using a single collagen peptide. Journal of Archaeological Science, 37(1), 13–20. 
  • Ehrlich, H., Deutzmann, R., Brunner, E., Cappellini, E., Koon, H., Solazzo, C., … Collins, M. J. (2010). Mineralization of the metre-long biosilica structures of glass sponges is templated on hydroxylated collagen. Nature Chemistry, 2(12), 1084–1088. 
  • White, R. J., Antonio, C., Budarin, V. L., Bergström, E., Thomas-Oates, J., & Clark, J. H. (2010). Polysaccharide-Derived Carbons for Polar Analyte Separations. Advanced Functional Materials, 20(11), 1834–1841. 


  • Pioselli, B., Munro, C., Raab, A., Deitrich, C. L., Songsrirote, K., Feldmann, J., & Thomas-Oates, J. (2009). Denaturing and non-denaturing microsolution isoelectric focussing to mine the metalloproteome. Metallomics, 1(6), 501. 
  • Zhang, W.-Q., Atkin, A. J., Thatcher, R. J., Whitwood, A. C., Fairlamb, I. J. S., & Lynam, J. M. (2009). Diversity and design of metal-based carbon monoxide-releasing molecules (CO-RMs) in aqueous systems: revealing the essential trends. Dalton Transactions, 0(22), 4351. 
  • Bäuerlein, P. S., Fairlamb, I. J. S., Jarvis, A. G., Lee, A. F., Müller, C., Slattery, J. M., … Whitwood, A. C. (2009). Ion-tagged π-acidic alkene ligands promote Pd-catalysed allyl–aryl couplings in an ionic liquid. Chemical Communications, 0(38), 5734. 
  • Rodpothong, P., Sullivan, J. T., Songsrirote, K., Sumpton, D., Cheung, K. W. J.-T., Thomas-Oates, J., … Ronson, C. W. (2009). Nodulation Gene Mutants of Mesorhizobium loti R7A— nodZ and nolL Mutants Have Host-Specific Phenotypes on Lotus spp. Molecular Plant-Microbe Interactions, 22(12), 1546–1554. 
  • Storr, T. E., Baumann, C. G., Thatcher, R. J., De Ornellas, S., Whitwood, A. C., & Fairlamb, I. J. S. (2009). Pd(0)/Cu(I)-mediated direct arylation of 2′-deoxyadenosines: Mechanistic role of Cu(I) and reactivity comparisons with related purine nucleosides. Journal of Organic Chemistry, 74(16), 5810–5821. 
  • Taylor, C. J., Wu, B., Nix, M. G. D., & Dessent, C. E. H. (2009). Probing the gas-phase stability of the Re2X82- (X = Cl, Br) and Re2XnY8-n2- (X = Cl, Y = Br, n = 1–3) metal–metal bond complexes. Chemical Physics Letters, 479(4–6), 184–188. 
  • Buckley, M., Collins, M., Thomas-Oates, J., & Wilson, J. C. (2009). Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 23(23), 3843–3854. 
  • Atkin, A. J., Williams, S., Sawle, P., Motterlini, R., Lynam, J. M., & Fairlamb, I. J. S. (2009). μ2-Alkyne dicobalt(0)hexacarbonyl complexes as carbon monoxide-releasing molecules (CO-RMs): probing the release mechanism. Dalton Transactions, 0(19), 3653. 

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