Publications - Centre of Excellence in Mass Spectrometry, University of York

2023

2022

Wilkinson, J. L., Boxall, A. B. A., Kolpin, D. W., Leung, K. M. Y., Lai, R. W. S., Galban-Malag, C., Adell, A. D., Mondon, J., Metian, M., Marchant, R. A., Bouzas-Monroy, A., Cuni-Sanchez, A., Coors, A., Carriquiriborde, P., Rojo, M., Gordon, C., Cara, M., Moermond, M., Luarte, T., … Teta, C. (2022). Pharmaceutical pollution of the world’s rivers. Proceedings of the National Academy of Sciences of the United States of America, 119(8), e2113947119. https://doi.org/10.1073/PNAS.2113947119
Cama, B., Ehlers, S., Szczerbowski, D., Thomas-Oates, J., Jiggins, C. D., Schulz, S., McMillan, W. O., & Dasmahapatra, K. K. (2022). Exploitation of an ancestral pheromone biosynthetic pathway contributes to diversification in Heliconius butterflies. Proceedings of the Royal Society B, 289(1979). https://doi.org/10.1098/RSPB.2022.0474
Catania, T., Li, Y., Winzer, T., Harvey, D., Meade, F., Caridi, A., Leech, A., Larson, T. R., Ning, Z., Chang, J., Van de Peer, Y., & Graham, I. A. (2022). A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago. Nature Communications 2022 13:1, 13(1), 1–11. https://doi.org/10.1038/s41467-022-30856-w
Czechowski, T., Branigan, C., Rae, A., Rathbone, D., Larson, T. R., Harvey, D., Catania, T. M., Zhang, D., Li, Y., Salmon, M., Bowles, D. J., O´Maille, P., & Graham, I. A. (2022). Artemisia annua L. plants lacking Bornyl diPhosphate Synthase reallocate carbon from monoterpenes to sesquiterpenes except artemisinin. Frontiers in Plant Science, 13. https://doi.org/10.3389/FPLS.2022.1000819
Czechowski, T., Forestier, E., Swamidatta, S. H., Gilday, A. D., Cording, A., Larson, T. R., Harvey, D., Li, Y., He, Z., King, A. J., Brown, G. D., & Graham, I. A. (2022). Gene discovery and virus-induced gene silencing reveal branched pathways to major classes of bioactive diterpenoids in Euphorbia peplus. Proceedings of the National Academy of Sciences of the United States of America, 119(21), e2203890119. https://doi.org/10.1073/PNAS.2203890119
Geoghegan, V., Carnielli, J. B. T., Jones, N. G., Saldivia, M., Antoniou, S., Hughes, C., Neish, R., Dowle, A., & Mottram, J. C. (2022). CLK1/CLK2-driven signalling at the Leishmania kinetochore is captured by spatially referenced proximity phosphoproteomics. Communications Biology 2022 5:1, 5(1), 1–17. https://doi.org/10.1038/s42003-022-04280-1
James, A. D., Leslie, T. K., Kaggie, J. D., Wiggins, L., Patten, L., Murphy O’Duinn, J., Langer, S., Labarthe, M. C., Riemer, F., Baxter, G., McLean, M. A., Gilbert, F. J., Kennerley, A. J., & Brackenbury, W. J. (2022). Sodium accumulation in breast cancer predicts malignancy and treatment response. British Journal of Cancer 2022 127:2, 127(2), 337–349. https://doi.org/10.1038/s41416-022-01802-w
Katyal, G., Ebanks, B., Dowle, A., Shephard, F., Papetti, C., Lucassen, M., & Chakrabarti, L. (2022). Quantitative Proteomics and Network Analysis of Differentially Expressed Proteins in Proteomes of Icefish Muscle Mitochondria Compared with Closely Related Red-Blooded Species. Biology, 11(8), 1118. https://doi.org/10.3390/BIOLOGY11081118/S1
Mason, A. S., Varley, C. L., Foody, O. M., Li, X., Skinner, K., Walker, D., Larson, T. R., Wakamatsu, D., Baker, S. C., & Southgate, J. (2022). LPCAT4 Knockdown Alters Barrier Integrity and Cellular Bioenergetics in Human Urothelium. International Journal of Molecular Sciences, 23(19), 11871. https://doi.org/10.3390/IJMS231911871
McGregor, N. G. S., de Boer, C., Santos, M., Haon, M., Navarro, D., Schroder, S., Berrin, J. G., Overkleeft, H. S., & Davies, G. J. (2022). Activity-based protein profiling reveals dynamic substrate-specific cellulase secretion by saprotrophic basidiomycetes. Biotechnology for Biofuels and Bioproducts, 15(1), 1–14. https://doi.org/10.1186/S13068-022-02107-Z
Möller, S. R., Lancefield, C. S., Oates, N. C., Simister, R., Dowle, A., Gomez, L. D., & McQueen-Mason, S. J. (2022). CRISPR/Cas9 suppression of OsAT10, a rice BAHD acyltransferase, reduces p-coumaric acid incorporation into arabinoxylan without increasing saccharification. Frontiers in Plant Science, 13, 2642. https://doi.org/10.3389/FPLS.2022.926300/BIBTEX
Wang, C. Y., Bergström, E., Southgate, J., & Thomas-Oates, J. (2022). Surface Shave: Revealing the Apical-Restricted Uroglycome. Journal of Proteome Research, 21(2), 360–374. https://doi.org/10.1021/ACS.JPROTEOME.1C00714
Webb, J. P., Paiva, A. C., Rossoni, L., Alstrom-Moore, A., Springthorpe, V., Vaud, S., Yeh, V., Minde, D. P., Langer, S., Walker, H., Hounslow, A., Nielsen, D. R., Larson, T., Lilley, K., Stephens, G., Thomas, G. H., Bonev, B. B., Kelly, D. J., Conradie, A., & Green, J. (2022). Multi-omic based production strain improvement (MOBpsi) for bio-manufacturing of toxic chemicals. Metabolic Engineering, 72, 133–149. https://doi.org/10.1016/J.YMBEN.2022.03.004
Williams, P. J. H., Boustead, G. A., Heard, D. E., Seakins, P. W., Rickard, A. R., & Chechik, V. (2022). New Approach to the Detection of Short-Lived Radical Intermediates. Journal of the American Chemical Society, 144(35), 15969–15976. https://doi.org/10.1021/JACS.2C03618
Wong, N. G. K., Rankine, C. D., Anstöter, C. S., & Dessent, C. E. H. (2022). Photostability of the deprotonated forms of the UV filters homosalate and octyl salicylate: molecular dissociation versus electron detachment following UV excitation. Physical Chemistry Chemical Physics, 24(28), 17068–17076. https://doi.org/10.1039/D2CP01612E
Yates, N. D. J., Akkad, S., Noble, A., Keenan, T., Hatton, N. E., Signoret, N., & Fascione, M. A. (2022). Catalyst-free site-selective cross-aldol bioconjugations. Green Chemistry, 24(20), 8046–8053. https://doi.org/10.1039/D2GC02292C

2021

Li, J., Wilkinson, J. L., & Boxall, A. B. A. (2021). Use of a large dataset to develop new models for estimating the sorption of active pharmaceutical ingredients in soils and sediments. Journal of Hazardous Materials, 415, 125688. https://doi.org/10.1016/J.JHAZMAT.2021.125688
Calderini, D. F., Castillo, F. M., Arenas-M, A., Molero, G., Reynolds, M. P., Craze, M., Bowden, S., Milner, M. J., Wallington, E. J., Dowle, A., Gomez, L. D., & McQueen-Mason, S. J. (2021). Overcoming the trade-off between grain weight and number in wheat by the ectopic expression of expansin in developing seeds leads to increased yield potential. New Phytologist, 230(2), 629–640. https://doi.org/10.1111/NPH.17048
Cercola, R., Wong, N. G. K., Rhodes, C., Olijnyk, L., Mistry, N. S., Hall, L. M., Berenbeim, J. A., Lynam, J. M., & Dessent, C. E. H. (2021). A “one pot” mass spectrometry technique for characterizing solution- and gas-phase photochemical reactions by electrospray mass spectrometry. RSC Advances, 11(32), 19500–19507. https://doi.org/10.1039/D1RA02581C
Chidwick, H. S., Flack, E. K. P., Keenan, T., Walton, J., Thomas, G. H., & Fascione, M. A. (2021). Reconstitution and optimisation of the biosynthesis of bacterial sugar pseudaminic acid (Pse5Ac7Ac) enables preparative enzymatic synthesis of CMP-Pse5Ac7Ac. Scientific Reports 2021 11:1, 11(1), 1–12. https://doi.org/10.1038/s41598-021-83707-x
Doherty, S. P., Henderson, S., Fiddyment, S., Finch, J., & Collins, M. J. (2021). Scratching the surface: the use of sheepskin parchment to deter textual erasure in early modern legal deeds. Heritage Science, 9(1), 29. https://doi.org/10.1186/s40494-021-00503-6
Forestier, E. C. F., Brown, G. D., Harvey, D., Larson, T. R., & Graham, I. A. (2021). Engineering Production of a Novel Diterpene Synthase Precursor in Nicotiana benthamiana. Frontiers in Plant Science, 12, 2246. https://doi.org/10.3389/FPLS.2021.757186
Gaffney, I., Brett Sallach, J., Wilson, J., Bergström, E., & Thomas-Oates, J. (2021). Metabolomic approaches to studying the response to drought stress in corn (Zea mays) cobs. Metabolites, 11(7), 438. https://doi.org/10.3390/METABO11070438
Hauser, J. R., Bergström, E. T., Kulak, A. N., Warriner, S. L., Thomas‐Oates, J., & Bon, R. S. (2021). Pyrene Tags for the Detection of Carbohydrates by Label‐Assisted Laser Desorption/Ionisation Mass Spectrometry**. ChemBioChem, cbic.202000721. https://doi.org/10.1002/cbic.202000721
Keenan, T., Spears, R. J., Akkad, S., Mahon, C. S., Hatton, N. E., Walton, J., Noble, A., Yates, N. D., Baumann, C. G., Parkin, A., Signoret, N., & Fascione, M. A. (2021). A Tale of Two Bioconjugations: PH Controlled Divergent Reactivity of Protein α-oxo-Aldehydes in Competing α-oxo-Mannich and Catalyst-Free Aldol Ligations. ACS Chemical Biology, 16(11), 2387–2400. https://doi.org/10.1021/ACSCHEMBIO.1C00531
Leadbeater, D. R., Oates, N. C., Bennett, J. P., Li, Y., Dowle, A. A., Taylor, J. D., Alponti, J. S., Setchfield, A. T., Alessi, A. M., Helgason, T., McQueen-Mason, S. J., & Bruce, N. C. (2021). Mechanistic strategies of microbial communities regulating lignocellulose deconstruction in a UK salt marsh. Microbiome, 9(1), 1–16. https://doi.org/10.1186/S40168-020-00964-0
Oates, N. C., Abood, A., Schirmacher, A. M., Alessi, A. M., Bird, S. M., Bennett, J. P., Leadbeater, D. R., Li, Y., Dowle, A. A., Liu, S., Tymokhin, V. I., Ralph, J., McQueen-Mason, S. J., & Bruce, N. C. (2021). A multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1. Proceedings of the National Academy of Sciences of the United States of America, 118(18), e2008888118. https://doi.org/10.1073/PNAS.2008888118
Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A. A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C., & McQueen-Mason, S. J. (2021). Characterisation of the enzyme transport path between shipworms and their bacterial symbionts. BMC Biology, 19(1), 1–18. https://doi.org/10.1186/S12915-021-01162-6
Presslee, S., Penkman, K., Fischer, R., Richards-Slidel, E., Southon, J., Hospitaleche, C. A., Collins, M., & MacPhee, R. (2021). Assessment of different screening methods for selecting palaeontological bone samples for peptide sequencing. Journal of Proteomics, 230, 103986. https://doi.org/10.1016/j.jprot.2020.103986
Rodrigues, A. M., Langer, S., Carrasquinho, I., Bergström, E., Larson, T., Thomas-Oates, J., & António, C. (2021). Pinus pinaster Early Hormonal Defence Responses to Pinewood Nematode (Bursaphelenchus xylophilus) Infection. Metabolites, 11(4), 227. https://doi.org/10.3390/metabo11040227
Sabbadin, F., Urresti, S., Henrissat, B., Avrova, A. O., Welsh, L. R. J., Lindley, P. J., Csukai, M., Squires, J. N., Walton, P. H., Davies, G. J., Bruce, N. C., Whisson, S. C., & McQueen-Mason, S. J. (2021). Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes. Science, 373(6556), 774–779. https://doi.org/10.1126/SCIENCE.ABJ1342
Sturm, S., Dowle, A., Audsley, N., & Isaac, R. E. (2021). Mass spectrometric characterisation of the major peptides of the male ejaculatory duct, including a glycopeptide with an unusual zwitterionic glycosylation. Journal of Proteomics, 246, 104307. https://doi.org/10.1016/J.JPROT.2021.104307
Uleanya, K. O., & Dessent, C. E. H. (2021). Investigating the mapping of chromophore excitations onto the electron detachment spectrum: photodissociation spectroscopy of iodide ion–thiouracil clusters. Physical Chemistry Chemical Physics, 23(2), 1021–1030. https://doi.org/10.1039/D0CP05920J
Wong, N. G. K., Rankine, C. D., & Dessent, C. E. H. (2021a). Linking Electronic Relaxation Dynamics and Ionic Photofragmentation Patterns for the Deprotonated UV Filter Benzophenone-4. Journal of Physical Chemistry Letters, 12(11), 2831–2836. https://doi.org/10.1021/ACS.JPCLETT.1C00423
Wong, N. G. K., Rankine, C. D., & Dessent, C. E. H. (2021b). Measurement of the Population of Electrosprayed Deprotomers of Coumaric Acids Using UV-Vis Laser Photodissociation Spectroscopy. Journal of Physical Chemistry A, 125(31), 6703–6714. https://doi.org/10.1021/ACS.JPCA.1C04880
Wong, N. G. K., Rhodes, C., & Dessent, C. E. H. (2021). Photodegradation of Riboflavin under Alkaline Conditions: What Can Gas-Phase Photolysis Tell Us about What Happens in Solution? Molecules 2021, Vol. 26, Page 6009, 26(19), 6009. https://doi.org/10.3390/MOLECULES26196009
Yen, C. Y., Lin, M. G., Chen, B. W., Ng, I. W., Read, N., Kabli, A. F., Wu, C. T., Shen, Y. Y., Chen, C. H., Barillà, D., Sun, Y. J., & Hsiao, C. D. (2021). Chromosome segregation in Archaea: SegA– and SegB–DNA complex structures provide insights into segrosome assembly. Nucleic Acids Research, 49(22), 13150–13164. https://doi.org/10.1093/NAR/GKAB1155

2020

Brabham, R. L., Keenan, T., Husken, A., Bilsborrow, J., McBerney, R., Kumar, V., Turnbull, W. B., & Fascione, M. A. (2020). Rapid sodium periodate cleavage of an unnatural amino acid enables unmasking of a highly reactive α-oxo aldehyde for protein bioconjugation. Organic and Biomolecular Chemistry, 18(21), 4000–4003. https://doi.org/10.1039/d0ob00972e
Flack, E. K. P., Chidwick, H. S., Guchhait, G., Keenan, T., Budhadev, D., Huang, K., Both, P., Mas Pons, J., Ledru, H., Rui, S., Stafford, G. P., Shaw, J. G., Galan, M. C., Flitsch, S., Thomas, G. H., & Fascione, M. A. (2020). Biocatalytic Transfer of Pseudaminic Acid (Pse5Ac7Ac) Using Promiscuous Sialyltransferases in a Chemoenzymatic Approach to Pse5Ac7Ac-Containing Glycosides. ACS Catalysis, 10(17), 9986–9993. https://doi.org/10.1021/acscatal.0c02189
Keenan, T., Parmeggiani, F., Malassis, J., Fontenelle, C. Q., Vendeville, J. B., Offen, W., Both, P., Huang, K., Marchesi, A., Heyam, A., Young, C., Charnock, S. J., Davies, G. J., Linclau, B., Flitsch, S. L., & Fascione, M. A. (2020). Profiling Substrate Promiscuity of Wild-Type Sugar Kinases for Multi-fluorinated Monosaccharides. Cell Chemical Biology, 27(9), 1199-1206.e5. https://doi.org/10.1016/j.chembiol.2020.06.005
Flack, E. K. P., Chidwick, H. S., Guchhait, G., Keenan, T., Budhadev, D., Huang, K., Both, P., Mas Pons, J., Ledru, H., Rui, S., Stafford, G. P., Shaw, J. G., Galan, M. C., Flitsch, S., Thomas, G. H., & Fascione, M. A. (2020). Biocatalytic Transfer of Pseudaminic Acid (Pse5Ac7Ac) Using Promiscuous Sialyltransferases in a Chemoenzymatic Approach to Pse5Ac7Ac-Containing Glycosides. ACS Catalysis, 10(17), 9986–9993. https://doi.org/10.1021/acscatal.0c02189
Cuetos, A., Iglesias-Fernández, J., Danesh-Azari, H.-R., Zukic, E., Dowle, A., Osuna, S., & Grogan, G. (2020). Mutational Analysis of Linalool Dehydratase Isomerase Suggests That Alcohol and Alkene Transformations Are Catalyzed Using Noncovalent Mechanisms. ACS Catalysis, 10(19), 11136–11146. https://doi.org/10.1021/acscatal.0c02958
Souter, P., Vaughan, J., Butcher, K., Dowle, A., Cunningham, J., Dodd, J., Hall, M., Wilson, D., Horner, A., & Genever, P. (2020). Identification of mesenchymal stromal cell survival responses to antimicrobial silver ion concentrations released from orthopaedic implants. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-76087-1
Ferreira, T. R., Dowle, A. A., Parry, E., Alves-Ferreira, E. V. C., Hogg, K., Kolokousi, F., Larson, T. R., Plevin, M. J., Cruz, A. K., & Walrad, P. B. (2020). PRMT7 regulates RNA-binding capacity and protein stability in Leishmania parasites. Nucleic Acids Research, 48(10), 5511–5526. https://doi.org/10.1093/nar/gkaa211
Lia, A., Dowle, A., Taylor, C., Santino, A., & Roversi, P. (2020). Partial catalytic Cys oxidation of human GAPDH to Cys-sulfonic acid. Wellcome Open Research, 5, 114. https://doi.org/10.12688/wellcomeopenres.15893.2
Raghavendran, V., Webb, J. P., Cartron, M. L., Springthorpe, V., Larson, T. R., Hines, M., Mohammed, H., Zimmerman, W. B., Poole, R. K., & Green, J. (2020). A microbubble-sparged yeast propagation-fermentation process for bioethanol production. Biotechnology for Biofuels, 13(1), 104. https://doi.org/10.1186/s13068-020-01745-5
Cuetos, A., Iglesias-Fernández, J., Danesh-Azari, H.-R., Zukic, E., Dowle, A., Osuna, S., & Grogan, G. (2020). Mutational Analysis of Linalool Dehydratase Isomerase Suggests That Alcohol and Alkene Transformations Are Catalyzed Using Noncovalent Mechanisms. ACS Catalysis, 10(19), 11136–11146. https://doi.org/10.1021/acscatal.0c02958
Sturm, S., Dowle, A., Audsley, N., & Isaac, R. E. (2020). The structure of the Drosophila melanogaster sex peptide: Identification of hydroxylated isoleucine and a strain variation in the pattern of amino acid hydroxylation. Insect Biochemistry and Molecular Biology, 124, 103414. https://doi.org/10.1016/j.ibmb.2020.103414
Hulatt, C. J., Smolina, I., Dowle, A., Kopp, M., Vasanth, G. K., Hoarau, G. G., Wijffels, R. H., & Kiron, V. (2020). Proteomic and Transcriptomic Patterns during Lipid Remodeling in Nannochloropsis gaditana. International Journal of Molecular Sciences, 21(18), 6946. https://doi.org/10.3390/ijms21186946
Stojanovski, D., Živaljević, I., Dimitrijević, V., Dunne, J., Evershed, R. P., Balasse, M., Dowle, A., Hendy, J., McGrath, K., Fischer, R., Speller, C., Jovanović, J., Casanova, E., Knowles, T., Balj, L., Naumov, G., Putica, A., Starović, A., & Stefanović, S. (2020). Living off the land: Terrestrial-based diet and dairying in the farming communities of the Neolithic Balkans. PLOS ONE, 15(8), e0237608. https://doi.org/10.1371/journal.pone.0237608
Cracknell, T., Mannsverk, S., Nichols, A., Dowle, A., & Blanco, G. (2020). Proteomic resolution of IGFN1 complexes reveals a functional interaction with the actin nucleating protein COBL. Experimental Cell Research, 395(2), 112179. https://doi.org/10.1016/j.yexcr.2020.112179
Calderini, D. F., Castillo, F. M., Arenas‐M, A., Molero, G., Reynolds, M. P., Craze, M., Bowden, S., Milner, M. J., Wallington, E. J., Dowle, A., Gomez, L. D., & McQueen‐Mason, S. J. (2020). Overcoming the trade‐off between grain weight and number in wheat by the ectopic expression of expansin in developing seeds leads to increased yield potential. New Phytologist, nph.17048. https://doi.org/10.1111/nph.17048
Drieu, L., Rageot, M., Wales, N., Stern, B., Lundy, J., Zerrer, M., Gaffney, I., Bondetti, M., Spiteri, C., Thomas-Oates, J., & Craig, O. E. (2020). Is it possible to identify ancient wine production using biomolecular approaches? In Science and Technology of Archaeological Research (Vol. 6, Issue 1, pp. 16–29). Routledge. https://doi.org/10.1080/20548923.2020.1738728
Olea‐Ozuna, R. J., Poggio, S., EdBergström, Quiroz‐Rocha, E., García‐Soriano, D. A., Sahonero‐Canavesi, D. X., Padilla‐Gómez, J., Martínez‐Aguilar, L., López‐Lara, I. M., Thomas‐Oates, J., & Geiger, O. (2020). Five structural genes required for ceramide synthesis in Caulobacter and for bacterial survival. Environmental Microbiology, 1462-2920.15280. https://doi.org/10.1111/1462-2920.15280
Conti, M. L. G., Bates, M. R., Preece, R. C., Penkman, K. E. H., & Keely, B. J. (2020). Molecular fossils as a tool for tracking Holocene sea‐level change in the Loch of Stenness, Orkney. Journal of Quaternary Science, jqs.3238. https://doi.org/10.1002/jqs.3238

2019

Webb, J., Springthorpe, V., Rossoni, L., Minde, D.-P., Langer, S., Walker, H., … Green, J. (2019). Systems Analyses Reveal the Resilience of Escherichia coli Physiology during Accumulation and Export of the Nonnative Organic Acid Citramalate . MSystems, 4(4). https://doi.org/10.1128/msystems.00187-19
Liang, J., Klingl, A., Lin, Y. Y., Boul, E., Thomas-Oates, J., & Marín, M. (2019). A subcompatible rhizobium strain reveals infection duality in Lotus. Journal of Experimental Botany, 70(6), 1903–1913. https://doi.org/10.1093/jxb/erz057
Demarchi, B., Presslee, S., Gutiérrez-Zugasti, I., González-Morales, M., Marín-Arroyo, A. B., Straus, L. G., & Fischer, R. (2019). Birds of prey and humans in prehistoric Europe: A view from El Mirón Cave, Cantabria (Spain). Journal of Archaeological Science: Reports, 24, 244–252. https://doi.org/10.1016/j.jasrep.2019.01.010
Keenan, T., Dowle, A., Bates, R., & Smith, M. C. M. (2019). Characterization of the streptomyces coelicolor glycoproteome reveals glycoproteins important for cell wall biogenesis. MBio, 10(3). https://doi.org/10.1128/mBio.01092-19
Wong, N. G. K., Berenbeim, J. A., & Dessent, C. E. H. (2019). Direct Observation of Photochemical Free Radical Production from the Sunscreen 2‐Phenylbenzimidazole‐5‐Sulfonic Acid via Laser‐Interfaced Mass Spectrometry. ChemPhotoChem, 3(12), 1231–1237. https://doi.org/10.1002/cptc.201900149
Fowler, C. A., Sabbadin, F., Ciano, L., Hemsworth, G. R., Elias, L., Bruce, N., … Walton, P. H. (2019). Discovery, activity and characterisation of an AA10 lytic polysaccharide oxygenase from the shipworm symbiont Teredinibacter turnerae. Biotechnology for Biofuels, 12(1). https://doi.org/10.1186/s13068-019-1573-x
Pinheiro, C., Dickinson, E., Marriott, A., Ribeiro, I. C., Pintó-Marijuan, M., António, C., … Wilson, J. (2019). Distinctive phytohormonal and metabolic profiles of Arabidopsis thaliana and Eutrema salsugineum under similar soil drying. Planta, 249(5), 1417–1433. https://doi.org/10.1007/s00425-019-03095-5
Schröder, S. P., de Boer, C., McGregor, N. G. S., Rowland, R. J., Moroz, O., Blagova, E., … Overkleeft, H. S. (2019). Dynamic and Functional Profiling of Xylan-Degrading Enzymes in Aspergillus Secretomes Using Activity-Based Probes. ACS Central Science, 5(6), 1067–1078. https://doi.org/10.1021/acscentsci.9b00221
Paradisi, A., Johnston, E. M., Tovborg, M., Nicoll, C. R., Ciano, L., Dowle, A., … Walton, P. H. (2019). Formation of a Copper(II)-Tyrosyl Complex at the Active Site of Lytic Polysaccharide Monooxygenases following Oxidation by H2O2. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.9b09833
Witkos, T. M., Chan, W. L., Joensuu, M., Rhiel, M., Pallister, E., Thomas-Oates, J., … Lowe, M. (2019). GORAB scaffolds COPI at the trans-Golgi for efficient enzyme recycling and correct protein glycosylation. Nature Communications, 10(1), 127. https://doi.org/10.1038/s41467-018-08044-6
Simpson, J. P., Fascione, M., Bergström, E., Wilson, J., Collins, M. J., Penkman, K. E. H., & Thomas‐Oates, J. (2019). Ionisation bias undermines the use of MALDI for estimating peptide deamidation: synthetic peptide studies demonstrate ESI gives more reliable response ratios. Rapid Communications in Mass Spectrometry, rcm.8441. https://doi.org/10.1002/rcm.8441
Singh, R., Bennett, J. P., Gupta, M., Sharma, M., Eqbal, D., Alessi, A. M., … Yazdani, S. S. (2019). Mining the biomass deconstructing capabilities of rice yellow stem borer symbionts. Biotechnology for Biofuels, 12(1), 265. https://doi.org/10.1186/s13068-019-1603-8
Fisher, P., Spencer, H., Thomas-Oates, J., Wood, A. J., & Ungar, D. (2019). Modeling Glycan Processing Reveals Golgi-Enzyme Homeostasis upon Trafficking Defects and Cellular Differentiation. Cell Reports, 27(4), 1231–1243.e6. https://doi.org/10.1016/J.CELREP.2019.03.107
Cercola, R., Matthews, E., & Dessent, C. E. H. (2019). Near-threshold electron transfer in anion-nucleobase clusters: does the identity of the anion matter? Molecular Physics, 117(21), 3001–3010. https://doi.org/10.1080/00268976.2019.1596327
High, K. E., Ashton, P. D., Nelson, M., Rylott, E. L., Thomas-Oates, J. E., & Hodson, M. E. (2019). New approaches using mass spectrometry to investigate changes to cytokinin and abscisic acid (ABA) concentrations in soil. Soil Biology and Biochemistry, 135, 108–116. https://doi.org/10.1016/j.soilbio.2019.04.017
Presslee, S., Slater, G. J., Pujos, F., Forasiepi, A. M., Fischer, R., Molloy, K., … MacPhee, R. D. E. (2019). Palaeoproteomics resolves sloth relationships. Nature Ecology and Evolution, 3(7), 1121–1130. https://doi.org/10.1038/s41559-019-0909-z
Ferreira, T. R., Dowle, A. A., Parry, E., Alves-Ferreira, E. V. C., Kolokousi, F., Larson, T. R., … Walrad, P. B. (2019). Post-translational epigenetics: PRMT7 regulates RNA-binding capacity and protein stability to control Leishmania parasite virulence. BioRxiv, 736736. https://doi.org/10.1101/736736
Digomann, D., Kurth, I., Tyutyunnykova, A., Chen, O., Löck, S., Gorodetska, I., … Dubrovska, A. (2019). The CD98 heavy chain is a marker and regulator of head and neck squamous cell carcinoma radiosensitivity. Clinical Cancer Research, clincanres.2951.2018. https://doi.org/10.1158/1078-0432.CCR-18-2951
De Pablos, L. M., Ferreira, T. R., Dowle, A. A., Forrester, S., Parry, E., Newling, K., & Walrad, P. B. (2019). The mRNA-bound Proteome of Leishmania mexicana: Novel genetic insight into an ancient parasite*. Molecular and Cellular Proteomics, 18(7), 1271–1284. https://doi.org/10.1074/mcp.RA118.001307
Fisher, P., Thomas-Oates, J., Wood, A. J., & Ungar, D. (2019). The N-Glycosylation Processing Potential of the Mammalian Golgi Apparatus. Frontiers in Cell and Developmental Biology, 7. https://doi.org/10.3389/fcell.2019.00157

2018

Wilson, K. M., Jagger, A. M., Walker, M., Seinkmane, E., Fox, J. M., Kröger, R., … Ungar, D. (2018). Glycans modify mesenchymal stem cell differentiation to impact on the function of resulting osteoblasts. Journal of Cell Science, 131(4), jcs209452. https://doi.org/10.1242/jcs.209452
Oldenkamp, R., Hoeks, S., Čengić, M., Barbarossa, V., Burns, E. E., Boxall, A. B. A., & Ragas, A. M. J. (2018). A High-Resolution Spatial Model to Predict Exposure to Pharmaceuticals in European Surface Waters: EPiE. Environmental Science and Technology, 52(21), 12494–12503. https://doi.org/10.1021/acs.est.8b03862
Sabbadin, F., Hemsworth, G. R., Ciano, L., Henrissat, B., Dupree, P., Tryfona, T., … McQueen-Mason, S. J. (2018). An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion. Nature Communications, 9(1), 756. https://doi.org/10.1038/s41467-018-03142-x
Burns, E. E., Carter, L. J., Snape, J., Thomas-Oates, J., & Boxall, A. B. A. (2018, May). Application of prioritization approaches to optimize environmental monitoring and testing of pharmaceuticals. Journal of Toxicology and Environmental Health - Part B: Critical Reviews. Taylor & Francis. https://doi.org/10.1080/10937404.2018.1465873
Alessi, A. M., Bird, S. M., Oates, N. C., Li, Y., Dowle, A. A., Novotny, E. H., … Bruce, N. C. (2018). Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies. Biotechnology for Biofuels, 11(1), 166. https://doi.org/10.1186/s13068-018-1164-2
Smith, R. K., Stacey, R. J., Bergström, E., & Thomas-Oates, J. (2018). Detection of opium alkaloids in a Cypriot base-ring juglet. Analyst, 143(21), 5127–5136. https://doi.org/10.1039/c8an01040d
Besser, K., Malyon, G. P., Eborall, W. S., Paro da Cunha, G., Filgueiras, J. G., Dowle, A., … McQueen-Mason, S. J. (2018). Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans. Nature Communications, 9(1), 5125. https://doi.org/10.1038/s41467-018-07575-2
Mays, S., Roberts, D., Marshall, P., Pike, A. W. G., van Heekeren, V., Bronk Ramsey, C., … Bedford, J. (2018). Lives before and after Stonehenge: An osteobiographical study of four prehistoric burials recently excavated from the Stonehenge World Heritage Site. Journal of Archaeological Science: Reports, 20, 692–710. https://doi.org/10.1016/J.JASREP.2018.06.008
Burns, E. E., & Boxall, A. B. A. (2018, November 1). Microplastics in the aquatic environment: Evidence for or against adverse impacts and major knowledge gaps. Environmental Toxicology and Chemistry. John Wiley & Sons, Ltd. https://doi.org/10.1002/etc.4268
Brabham, R. L., Spears, R. J., Walton, J., Tyagi, S., Lemke, E. A., & Fascione, M. A. (2018). Palladium-unleashed proteins: Gentle aldehyde decaging for site-selective protein modification. Chemical Communications, 54(12), 1501–1504. https://doi.org/10.1039/c7cc07740h
Becerra-Rivera, V. A., Bergström, E., Thomas-Oates, J., & Dunn, M. F. (2018). Polyamines are required for normal growth in sinorhizobium meliloti. Microbiology (United Kingdom), 164(4), 600–613. https://doi.org/10.1099/mic.0.000615
Matthews, E., Cercola, R., & Dessent, C. E. H. (2018). Protomer-dependent electronic spectroscopy and photochemistry of the model flavin chromophore alloxazine. Molecules, 23(8), 2036. https://doi.org/10.3390/molecules23082036
Spears, R. J., Brabham, R. L., Budhadev, D., Keenan, T., McKenna, S., Walton, J., … Fascione, M. A. (2018). Site-selective C-C modification of proteins at neutral pH using organocatalyst-mediated cross aldol ligations. Chemical Science, 9(25), 5585–5593. https://doi.org/10.1039/c8sc01617h
Urresti, S., Cartmell, A., Liu, F., Walton, P. H., & Davies, G. J. (2018). Structural studies of the unusual metal-ion site of the GH124 endoglucanase from Ruminiclostridium thermocellum. Acta Crystallographica Section F: Structural Biology Communications, 74(8), 496–505. https://doi.org/10.1107/S2053230X18006842
Burns, E. E., Carter, L. J., Kolpin, D. W., Thomas-Oates, J., & Boxall, A. B. A. (2018). Temporal and spatial variation in pharmaceutical concentrations in an urban river system. Water Research, 137, 72–85. https://doi.org/10.1016/j.watres.2018.02.066
Paes, W., Dowle, A., Coldwell, J., Leech, A., Ganderton, T., & Brzozowski, A. (2018). The Chlamydia trachomatis PmpD adhesin forms higher order structures through disulphide-mediated covalent interactions. PLOS ONE, 13(6), e0198662. https://doi.org/10.1371/journal.pone.0198662
Bínová, E., Bína, D., Ashford, D. A., Thomas-Oates, J., & Nohýnková, E. (2017). Trehalose During Two Stress Responses in Acanthamoeba: Differentiation Between Encystation and Pseudocyst Formation. Protist, 168(6), 649–662. https://doi.org/10.1016/J.PROTIS.2017.09.001
Sabbadin, F., Pesante, G., Elias, L., Besser, K., Li, Y., Steele-King, C., … McQueen-Mason, S. J. (2018). Uncovering the molecular mechanisms of lignocellulose digestion in shipworms. Biotechnology for Biofuels, 11(1), 59. https://doi.org/10.1186/s13068-018-1058-3

2017

Coverley, D., Higgins, G., West, D., Jackson, O. T., Dowle, A., Haslam, A., … White, J. (2017). A quantitative immunoassay for lung cancer biomarker CIZ1b in patient plasma. Clinical Biochemistry, 50(6), 336–343. https://doi.org/10.1016/J.CLINBIOCHEM.2016.11.015
Burns, E. E., Thomas-Oates, J., Kolpin, D. W., Furlong, E. T., & Boxall, A. B. . (2017). Are exposure predictions, used for the prioritization of pharmaceuticals in the environment, fit for purpose? Environmental Toxicology and Chemistry, 36(10), 2823–2832. https://doi.org/10.1002/etc.3842
Al-Khazrajy, O. S. A., & Boxall, A. B. A. (2017). Determination of pharmaceuticals in freshwater sediments using ultrasonic-assisted extraction with SPE clean-up and HPLC-DAD or LC-ESI-MS/MS detection. Analytical Methods, 9(28), 4190–4200. https://doi.org/10.1039/c7ay00650k
Skeene, K., Walker, M., Clarke, G., Bergström, E., Genever, P., Ungar, D., & Thomas-Oates, J. (2017). One Filter, One Sample, and the N - and O-Glyco(proteo)me: Toward a System to Study Disorders of Protein Glycosylation. Analytical Chemistry, 89(11), 5840–5849. https://doi.org/10.1021/acs.analchem.7b00143
Geoghegan, V., Stainton, K., Rainey, S. M., Ant, T. H., Dowle, A. A., Larson, T., … Sinkins, S. P. (2017). Perturbed cholesterol and vesicular trafficking associated with dengue blocking in Wolbachia-infected Aedes aegypti cells. Nature Communications, 8(1), 526. https://doi.org/10.1038/s41467-017-00610-8
Cercola, R., Matthews, E., & Dessent, C. E. H. (2017). Photoexcitation of Adenosine 5′-Triphosphate Anions in Vacuo: Probing the Influence of Charge State on the UV Photophysics of Adenine. Journal of Physical Chemistry B, 121(22), 5553–5561. https://doi.org/10.1021/acs.jpcb.7b03435
Bean, T. G., Arnold, K. E., Lane, J. M., Bergström, E., Thomas-Oates, J., Rattner, B. A., & Boxall, A. B. A. (2017). Predictive framework for estimating exposure of birds to pharmaceuticals. Environmental Toxicology and Chemistry, 36(9), 2335–2344. https://doi.org/10.1002/etc.3771
Paredi, G., Benoni, R., Pighini, G., Ronda, L., Dowle, A., Ashford, D., … Mozzarelli, A. (2017). Proteomics of Parma Dry-Cured Ham: Analysis of Salting Exudates. Journal of Agricultural and Food Chemistry, 65(30), 6307–6316. https://doi.org/10.1021/acs.jafc.7b01293
Alessi, A. M., Bird, S. M., Bennett, J. P., Oates, N. C., Li, Y., Dowle, A. A., … Bruce, N. C. (2017). Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities. Scientific Reports, 7(1), 2356. https://doi.org/10.1038/s41598-017-02506-5
Raines, S. A., Hodgkinson, M. R., Dowle, A. A., & Pryor, P. R. (2017). The Salmonella effector SseJ disrupts microtubule dynamics when ectopically expressed in normal rat kidney cells. PLOS ONE, 12(2), e0172588. https://doi.org/10.1371/journal.pone.0172588
Bínová, E., Bína, D., Ashford, D. A., Thomas-Oates, J., & Nohýnková, E. (2017). Trehalose During Two Stress Responses in Acanthamoeba: Differentiation Between Encystation and Pseudocyst Formation. Protist, 168(6), 649–662. https://doi.org/10.1016/J.PROTIS.2017.09.001

2016

Grundy, H. H., Reece, P., Buckley, M., Solazzo, C. M., Dowle, A. A., Ashford, D., … Collins, M. J. (2016). A mass spectrometry method for the determination of the species of origin of gelatine in foods and pharmaceutical products. Food Chemistry, 190, 276–284. https://doi.org/10.1016/j.foodchem.2015.05.054
Dowle, A. A., Wilson, J., & Thomas, J. R. (2016). Comparing the Diagnostic Classification Accuracy of iTRAQ, Peak-Area, Spectral-Counting, and emPAI Methods for Relative Quantification in Expression Proteomics. Journal of Proteome Research, 15(10), 3550–3562. https://doi.org/10.1021/acs.jproteome.6b00308
Marriott, A. S., Hunt, A. J., Bergström, E., Thomas-Oates, J., & Clark, J. H. (2016). Effect of rate of pyrolysis on the textural properties of naturally-templated porous carbons from alginic acid. Journal of Analytical and Applied Pyrolysis, 121, 62–66. https://doi.org/10.1016/j.jaap.2016.07.002
Bean, T. G., Bergstrom, E., Thomas-Oates, J., Wolff, A., Bartl, P., Eaton, B., & Boxall, A. B. A. (2016). Evaluation of a Novel Approach for Reducing Emissions of Pharmaceuticals to the Environment. Environmental Management, 58(4), 707–720. https://doi.org/10.1007/s00267-016-0728-9
Castangia, R., Hudson, S. R., Robinson, H. K., Flitsch, S. L., Thomas-Oates, J., & Routledge, A. (2016). Fabrication and Application of Isotopically Labelled Gold Arrays for Multiplexed Peptide Analysis. ChemBioChem, 17(21), 2007–2011. https://doi.org/10.1002/cbic.201600347
Wilson, K. M., Thomas-Oates, J. E., Genever, P. G., & Ungar, D. (2016). Glycan Profiling Shows Unvaried N-Glycomes in MSC Clones with Distinct Differentiation Potentials. Frontiers in Cell and Developmental Biology, 4, 52. https://doi.org/10.3389/fcell.2016.00052
Pires, V. M. R., Madeira, M. S., Dowle, A. A., Thomas, J., Almeida, A. M., & Prates, J. A. M. (2016). Increased intramuscular fat induced by reduced dietary protein in finishing pigs: Effects on the longissimus lumborum muscle proteome. Molecular BioSystems, 12(8), 2447–2457. https://doi.org/10.1039/c6mb00213g
Jorge, T. F., Rodrigues, J. A., Caldana, C., Schmidt, R., van Dongen, J. T., Thomas-Oates, J., & António, C. (2016, September 1). Mass spectrometry-based plant metabolomics: Metabolite responses to abiotic stress. Mass Spectrometry Reviews. Wiley-Blackwell. https://doi.org/10.1002/mas.21449
Dunning, C. J. R., Black, H. L., Andrews, K. L., Davenport, E. C., Conboy, M., Chawla, S., … Evans, G. J. O. (2016). Multisite tyrosine phosphorylation of the N-terminus of Mint1/X11α by Src kinase regulates the trafficking of amyloid precursor protein. Journal of Neurochemistry, 137(4), 518–527. https://doi.org/10.1111/jnc.13571
Gorbanev, Y., O’Connell, D., & Chechik, V. (2016). Non-Thermal Plasma in Contact with Water: The Origin of Species. Chemistry - A European Journal, 22(10), 3496–3505. https://doi.org/10.1002/chem.201503771
Demarchi, B., Hall, S., Roncal-Herrero, T., Freeman, C. L., Woolley, J., Crisp, M. K., … Collins, M. J. (2016). Protein sequences bound to mineral surfaces persist into deep time. ELife, 5, e17092. https://doi.org/10.7554/elife.17092
Hendy, J., Collins, M., Teoh, K. Y., Ashford, D. A., Thomas-Oates, J., Donoghue, H. D., … Buckley, M. (2016). The challenge of identifying tuberculosis proteins in archaeological tissues. Journal of Archaeological Science, 66, 146–153. https://doi.org/10.1016/j.jas.2016.01.003
Simpson, J. P., Penkman, K. E. H., Demarchi, B., Koon, H., Collins, M. J., Thomas-Oates, J., … Wilson, J. (2016). The effects of demineralisation and sampling point variability on the measurement of glutamine deamidation in type I collagen extracted from bone. Journal of Archaeological Science, 69, 29–38. https://doi.org/10.1016/j.jas.2016.02.002
Matthews, E., Sen, A., Yoshikawa, N., Bergström, E., & Dessent, C. E. H. (2016). UV laser photoactivation of hexachloroplatinate bound to individual nucleobases: In vacuo as molecular level probes of a model photopharmaceutical. Physical Chemistry Chemical Physics, 18(22), 15143–15152. https://doi.org/10.1039/c6cp01676f

2015

Welker, F., Collins, M. J., Thomas, J. A., Wadsley, M., Brace, S., Cappellini, E., … MacPhee, R. D. E. (2015). Ancient proteins resolve the evolutionary history of Darwin’s South American ungulates. Nature, 522(7554), 81–84. https://doi.org/10.1038/nature14249
Fiddyment, S., Holsinger, B., Ruzzier, C., Devine, A., Binois, A., Albarella, U., … Collins, M. J. (2015). Animal origin of 13th-century uterine vellum revealed using noninvasive peptide fingerprinting. Proceedings of the National Academy of Sciences, 112(49), 15066–15071. https://doi.org/10.1073/pnas.1512264112
Warinner, C., Hendy, J., Speller, C., Cappellini, E., Fischer, R., Trachsel, C., … Collins, M. J. (2015). Direct evidence of milk consumption from ancient human dental calculus. Scientific Reports, 4(1), 7104. https://doi.org/10.1038/srep07104
Winzer, T., Kern, M., King, A. J., Larson, T. R., Teodor, R. I., Donninger, S. L., … Graham, I. A. (2015). Morphinan biosynthesis in opium poppy requires a P450-oxidoreductase fusion protein. Science, 349(6245), 309–312. https://doi.org/10.1126/science.aab1852
Teasdale, M. D., van Doorn, N. L., Fiddyment, S., Webb, C. C., O’Connor, T., Hofreiter, M., … Bradley, D. G. (2015). Paging through history: parchment as a reservoir of ancient DNA for next generation sequencing. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 370(1660), 20130379. https://doi.org/10.1098/rstb.2013.0379
Hogg, K., Thomas, J., Ashford, D., Cartwright, J., Coldwell, R., Weston, D. J., … O’Toole, P. (2015). Quantification of proteins by flow cytometry: Quantification of human hepatic transporter P-gp and OATP1B1 using flow cytometry and mass spectrometry. Methods, 82, 38–46. https://doi.org/10.1016/j.ymeth.2015.03.030
Nelson, M., Yang, M., Dowle, A. A., Thomas, J. R., & Brackenbury, W. J. (2015). The sodium channel-blocking antiepileptic drug phenytoin inhibits breast tumour growth and metastasis. Molecular Cancer, 14(1), 13. https://doi.org/10.1186/s12943-014-0277-x
Welker, F., Soressi, M., Rendu, W., Hublin, J. J., & Collins, M. (2015). Using ZooMS to identify fragmentary bone from the Late Middle/Early Upper Palaeolithic sequence of Les Cottés, France. Journal of Archaeological Science, 54, 279–286. https://doi.org/10.1016/j.jas.2014.12.010
Harvey, A. J. A., Sen, A., Yoshikawa, N., & Dessent, C. E. H. (2015). UV laser spectroscopy of mass-selected ionic liquid building blocks in the gas-phase. Chemical Physics Letters, 634, 216–220. https://doi.org/10.1016/j.cplett.2015.06.023

2014

Marriott, A. S., Bergström, E., Hunt, A. J., Thomas-Oates, J., & Clark, J. H. (2014). A natural template approach to mesoporous carbon spheres for use as green chromatographic stationary phases. RSC Adv., 4(1), 222–228. https://doi.org/10.1039/C3RA44428G
Vaiglova, P., Bogaard, A., Collins, M., Cavanagh, W., Mee, C., Renard, J., … Fraser, R. (2014). An integrated stable isotope study of plants and animals from Kouphovouno, southern Greece: a new look at Neolithic farming. Journal of Archaeological Science, 42, 201–215. https://doi.org/10.1016/J.JAS.2013.10.023
Sen, A., & Dessent, C. E. H. (2014). Communication: Photoactivation of nucleobase bound platinum II metal complexes: Probing the influence of the nucleobase. The Journal of Chemical Physics, 141(24), 241101. https://doi.org/10.1063/1.4904259
Carter, L. J., Garman, C. D., Ryan, J., Dowle, A., Bergström, E., Thomas-Oates, J., & Boxall, A. B. A. (2014). Fate and Uptake of Pharmaceuticals in Soil–Earthworm Systems. Environmental Science & Technology, 48(10), 5955–5963. https://doi.org/10.1021/es500567w
Abdul Rahman, S., Bergström, E., Watson, C. J., Wilson, K. M., Ashford, D. A., Thomas, J. R., … Thomas-Oates, J. E. (2014). Filter-Aided N -Glycan Separation (FANGS): A Convenient Sample Preparation Method for Mass Spectrometric N -Glycan Profiling. Journal of Proteome Research, 13(3), 1167–1176. https://doi.org/10.1021/pr401043r
Österman, J., Marsh, J., Laine, P. K., Zeng, Z., Alatalo, E., Sullivan, J. T., … Lindström, K. (2014). Genome sequencing of two Neorhizobium galegae strains reveals a noeT gene responsible for the unusual acetylation of the nodulation factors. BMC Genomics, 15(1), 500. https://doi.org/10.1186/1471-2164-15-500
Marriott, A. S., Hunt, A. J., Bergström, E., Wilson, K., Budarin, V. L., Thomas-Oates, J., … Brydson, R. (2014). Investigating the structure of biomass-derived non-graphitizing mesoporous carbons by electron energy loss spectroscopy in the transmission electron microscope and X-ray photoelectron spectroscopy. Carbon, 67, 514–524. https://doi.org/10.1016/j.carbon.2013.10.024
Sen, A., & Dessent, C. E. H. (2014). Mapping the UV Photophysics of Platinum Metal Complexes Bound to Nucleobases: Laser Spectroscopy of Isolated Uracil·Pt(CN) 4 2– and Uracil·Pt(CN) 6 2– Complexes. The Journal of Physical Chemistry Letters, 5(19), 3281–3285. https://doi.org/10.1021/jz501749j
Bromfield, S. M., Posocco, P., Chan, C. W., Calderon, M., Guimond, S. E., Turnbull, J. E., … Smith, D. K. (2014). Nanoscale self-assembled multivalent (SAMul) heparin binders in highly competitive, biologically relevant, aqueous media. Chemical Science, 5(4), 1484. https://doi.org/10.1039/c4sc00298a
Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., … Cappellini, E. (2014). Pathogens and host immunity in the ancient human oral cavity. Nature Genetics, 46(4), 336–344. https://doi.org/10.1038/ng.2906
Ives, J. W., Froese, D., Collins, M., & Brock, F. (2014). Radiocarbon and Protein Analyses Indicate an Early Holocene Age for the Osseous Rod from Grenfell, Saskatchewan, Canada. American Antiquity, 79(4), 782–793. https://doi.org/10.7183/0002-7316.79.4.782
Sen, A., Luxford, T. F. M., Yoshikawa, N., & Dessent, C. E. H. (2014). Solvent evaporation versus proton transfer in nucleobase–Pt(CN)4,62− dianion clusters: a collisional excitation and electronic laser photodissociation spectroscopy study. Physical Chemistry Chemical Physics, 16(29), 15490. https://doi.org/10.1039/c4cp00989d
Solazzo, C., Rogers, P. W., Weber, L., Beaubien, H. F., Wilson, J., & Collins, M. (2014). Species identification by peptide mass fingerprinting (PMF) in fibre products preserved by association with copper-alloy artefacts. Journal of Archaeological Science, 49, 524–535. https://doi.org/10.1016/J.JAS.2014.06.009

2013

2012

2011

Castro-Borges, W., Simpson, D. M., Dowle, A., Curwen, R. S., Thomas-Oates, J., Beynon, R. J., & Wilson, R. A. (2011). Abundance of tegument surface proteins in the human blood fluke Schistosoma mansoni determined by QconCAT proteomics. Journal of Proteomics, 74(9), 1519–1533. https://doi.org/10.1016/J.JPROT.2011.06.011
Barnard, A., Posocco, P., Pricl, S., Calderon, M., Haag, R., Hwang, M. E., … Smith, D. K. (2011). Degradable Self-Assembling Dendrons for Gene Delivery: Experimental and Theoretical Insights into the Barriers to Cellular Uptake. Journal of the American Chemical Society, 133(50), 20288–20300. https://doi.org/10.1021/ja2070736
Castro-Borges, W., Dowle, A., Curwen, R. S., Thomas-Oates, J., & Wilson, R. A. (2011). Enzymatic Shaving of the Tegument Surface of Live Schistosomes for Proteomic Analysis: A Rational Approach to Select Vaccine Candidates. PLoS Neglected Tropical Diseases, 5(3), e993. https://doi.org/10.1371/journal.pntd.0000993
O’Connor, S., Ali, E., Al-Sabah, S., Anwar, D., Bergström, E., Brown, K. A., … O’Connor, T. (2011). Exceptional preservation of a prehistoric human brain from Heslington, Yorkshire, UK. Journal of Archaeological Science, 38(7), 1641–1654. https://doi.org/10.1016/J.JAS.2011.02.030
Pinheiro, C., António, C., Ortuño, M. F., Dobrev, P. I., Hartung, W., Thomas-Oates, J., … Wilson, J. C. (2011). Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses. Journal of Experimental Botany, 62(14), 4965–4974. https://doi.org/10.1093/jxb/err194
Firth, A. G., Wilson, K., Baumann, C. G., & Fairlamb, I. J. S. (2011). Interrogation of a Sonogashira Cross-Coupling of 8-Bromoguanosine with Phenylacetylene on Amberlite: Evidence for Pd/Cu Ion Binding and Propagation of Pd/Cu Nanoparticles. Nucleosides, Nucleotides and Nucleic Acids, 30(2), 168–184. https://doi.org/10.1080/15257770.2010.548844
Hamilton, J. F., Rami Alfarra, M., Wyche, K. P., Ward, M. W., Lewis, A. C., McFiggans, G. B., … Purvis, R. M. (2011). Investigating the use of secondary organic aerosol as seed particles in simulation chamber experiments. Atmospheric Chemistry and Physics, 11(12), 5917–5929. https://doi.org/10.5194/acp-11-5917-2011
Thompson, A. J., Williams, R. J., Hakki, Z., Alonzi, D. S., Wennekes, T., Gloster, T. M., … Davies, G. J. (2012). Structural and mechanistic insight into N-glycan processing by endo-α-mannosidase. Proceedings of the National Academy of Sciences of the United States of America, 109(3), 781–786. https://doi.org/10.1073/pnas.1111482109
González-Silva, N., López-Lara, I. M., Reyes-Lamothe, R., Taylor, A. M., Sumpton, D., Thomas-Oates, J., & Geiger, O. (2011). The Dioxygenase-Encoding olsD Gene from Burkholderia cenocepacia Causes the Hydroxylation of the Amide-Linked Fatty Acyl Moiety of Ornithine-Containing Membrane Lipids. Biochemistry, 50(29), 6396–6408. https://doi.org/10.1021/bi200706v

2010

2009

Pioselli, B., Munro, C., Raab, A., Deitrich, C. L., Songsrirote, K., Feldmann, J., & Thomas-Oates, J. (2009). Denaturing and non-denaturing microsolution isoelectric focussing to mine the metalloproteome. Metallomics, 1(6), 501. https://doi.org/10.1039/b903607e
Zhang, W.-Q., Atkin, A. J., Thatcher, R. J., Whitwood, A. C., Fairlamb, I. J. S., & Lynam, J. M. (2009). Diversity and design of metal-based carbon monoxide-releasing molecules (CO-RMs) in aqueous systems: revealing the essential trends. Dalton Transactions, 0(22), 4351. https://doi.org/10.1039/b822157j
Bäuerlein, P. S., Fairlamb, I. J. S., Jarvis, A. G., Lee, A. F., Müller, C., Slattery, J. M., … Whitwood, A. C. (2009). Ion-tagged π-acidic alkene ligands promote Pd-catalysed allyl–aryl couplings in an ionic liquid. Chemical Communications, 0(38), 5734. https://doi.org/10.1039/b906823f
Rodpothong, P., Sullivan, J. T., Songsrirote, K., Sumpton, D., Cheung, K. W. J.-T., Thomas-Oates, J., … Ronson, C. W. (2009). Nodulation Gene Mutants of Mesorhizobium loti R7A— nodZ and nolL Mutants Have Host-Specific Phenotypes on Lotus spp. Molecular Plant-Microbe Interactions, 22(12), 1546–1554. https://doi.org/10.1094/mpmi-22-12-1546
Storr, T. E., Baumann, C. G., Thatcher, R. J., De Ornellas, S., Whitwood, A. C., & Fairlamb, I. J. S. (2009). Pd(0)/Cu(I)-mediated direct arylation of 2′-deoxyadenosines: Mechanistic role of Cu(I) and reactivity comparisons with related purine nucleosides. Journal of Organic Chemistry, 74(16), 5810–5821. https://doi.org/10.1021/jo9012282
Taylor, C. J., Wu, B., Nix, M. G. D., & Dessent, C. E. H. (2009). Probing the gas-phase stability of the Re2X82- (X = Cl, Br) and Re2XnY8-n2- (X = Cl, Y = Br, n = 1–3) metal–metal bond complexes. Chemical Physics Letters, 479(4–6), 184–188. https://doi.org/10.1016/J.CPLETT.2009.07.105
Buckley, M., Collins, M., Thomas-Oates, J., & Wilson, J. C. (2009). Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 23(23), 3843–3854. https://doi.org/10.1002/rcm.4316
Atkin, A. J., Williams, S., Sawle, P., Motterlini, R., Lynam, J. M., & Fairlamb, I. J. S. (2009). μ2-Alkyne dicobalt(0)hexacarbonyl complexes as carbon monoxide-releasing molecules (CO-RMs): probing the release mechanism. Dalton Transactions, 0(19), 3653. https://doi.org/10.1039/b904627p