Professor Jane Thomas-Oates Publications

2010 2009 2008 2007 2006 2005 2004 2003 2002 2001

2010

  • A multidisciplinary study of archaeological grape seeds.
    E Cappellini, M T Gilbert, F Geuna, G Fiorentino, A Hall, J Thomas-Oates, P Ashton, D Ashford, P Arthur, P Campos, J Kool, E Willerslev and M Collins, Naturwissenschaften, 2010, 97, 205-217.
  • Development and Application of Mass Spectrometric Methods for the Analysis of Progranulin N-Glycosylation.
    K Songsrirote, Z Li, D Ashford, A Bateman and J Thomas-Oates, J. Proteom., 2010, 73, 1479-1490, doi:10.1016/j.jprot.2010.02.013.
  • Polysaccharide-derived carbons for polar analyte separations.
    R J White, C Antonio, V L Budarin, E Bergström, J Thomas-Oates and J H Clark, Advanced Functional Materials, 2010, 20, 1834–1841.  doi: 10.1002/adma. 201000169.
  • Absolute quantification of superoxide dismutase (SOD) using species-specific isotope dilution analysis.
    C L Deitrich, S Braukmann, A Raab, C Munro, B Pioselli, E M Krupp, J E Thomas-Oates and J Feldmann, Anal. Bioanal. Chem., 2010, 397, 3515-3524, doi: 10.1007/s00216-010-3680-1.
  • Mineralization of the meter-long biosilica structures of glass sponges is templated on hydroxylated collagen.
    H Ehrlich, R Deutzmann, E Brunner, E Cappellini, H Koon, C Solazzo, Y Yang, D Ashford, J Thomas-Oates, M Lubeck, C Baessmann, T Langrock, R Hoffmann, G Wörheide, J Reitner, P Simon, A V Ereskovsky, D Kurek, M Mertig, D Vialykh, S Molodtsov, K Kummer, H Worch and M Collins, Nature Chemistry, 2010, in press.

2009

  • Evaluation of gel electrophoresis conditions for the separation of metal tagged proteins with subsequent laser ablation ICP-MS detection.
    A Raab, B Pioselli, C Munro, J Thomas-Oates and J Feldmann, Electrophoresis, 2009, 30, 303–314.
  • Bioactivity studies and chemical profile of the antidiabetic plant Genista tenera.
    A P Rauter, A Martins, R Lopes, J Ferreira, L M Serralheiro, M-E Araújo, C Borges, J Justino, F V Silva, M Goulart, J Thomas-Oates, J A Rodrigues, E Edwards, J P Noronha, R Pinto and H Mota-Filipe,  J. Ethnopharmacology, 2009, 122, 384-393.
  • Nod factor production by Rhizobium tropici CIAT899 is stimulated by sodium ions and osmotic pressure.
    J Estévez, M E Soria-Díaz, F J Fernández de Córdova,  B Morón, H  Manyani, A Gil-Serrano, J Thomas-Oates, A A N van Brussel, M S Dardanelli, C Sousa and M  Megías, FEMS Microbiol Lett, 2009, 293, 220-231.
  • Sinorhizobium fredii HH103 cgs mutants are unable to nodulate determinate- and indeterminate nodule-forming legumes and overproduce an altered EPS.
    J C Crespo-Rivas, I Margaret, Á Hidalgo, A M Buendía-Clavería, F J Ollero, F J López-Baena, P del Socorro Murdoch, M A Rodríguez-Carvajal, M E Soria-Díaz, M Reguera, J Lloret, ,D P Sumpton, J A Mosely, J E Thomas-Oates, A A N van Brussel, A Gil-Serrano, J M Vinardell and J E Ruiz-Sainz, Mol. Plant-Microbe Interact., 2009, 22, 575-588.
  • Towards the application of desorption electrospray ionisation mass spectrometry (DESI-MS) to the analysis of ancient proteins from artefacts.
    K Heaton, C Solazzo, M Collins, J Thomas-Oates and E Bergström, J Archaeol. Sci., 2009, 36, 2009, doi:10.1016/j.jas.2009.05.016.   
  • Denaturing and non-denaturing microsolution isoelectric foccusing to mine the metalloproteome.
    B Pioselli, C N Munro, A Raab, C Deitrich, K Songsrirote, J Feldmann and J Thomas-Oates, Metallomics, 2009, 1, 501-510, doi: 10.1039/b903607e.
  • Distinguishing between archaeological sheep and goat bones using a single collagen peptide.
    M Buckley, S W Kansa, S Howard, S Campbell, J Thomas-Oates and M Collins, J. Archaeol. Sci., 2009, 37, 13-20, doi:10.1016/j.jas.2009.08.020.
  • Nodulation gene mutants of Mesorhizobium loti strain R7A – nodZ and nolL mutants have host-specific phenotypes on Lotus species.
    P Rodpothong, J T Sullivan, K Songsrirote, D Sumpton, K W  J-T Cheung, J Thomas-Oates, S Radutoiu, J Stougaard and C W Ronson, Mol. Plant-Microbe Interact., 2009, 22, 1546–1554.
  • Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry.
    M Buckley, M Collins, J Thomas-Oates and J C Wilson, Rapid Commun. Mass Spectrom., 2009, 23, 3843-3854.
  • Mass Spectrometric Analysis of O-Linked Glycans released directly from Glycoproteins in Gels using b-Elimination.
    A M Taylor and J Thomas-Oates, in "Protein Protocols handbook", 3rd Edition, ed. John M Walker, 2009.
  • Metabolomic applications of HILIC-LC-MS.
    S Cubbon, C Antonio, J Wilson and J Thomas-Oates, Mass Spectrometry Reviews, 29, 671-684.

2008

  • Comment on ‘“Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry”.
    M Buckley, A Walker, J Strahler, S Y W Ho, Y Yang, C Smith, P Ashton, J Thomas Oates, E Cappellini, H Koon, K Penkman, B Watkins, D Ashford, C Solazzo, P Andrews, B Shapiro, P Ostrom, H Gandhi, W Miller, B Raney, M I Zylber, M T P Gilbert, R V Prigodich, M Ryan, K F Rijsdijk, A Janoo and M J Collins, Science, 2008, 319, 33c.
  • A Method of Isolating the Collagen (I) α2 Chain Carboxytelopeptide for Species Identification in Bone Fragments.
    M Buckley,  M J Collins, J Thomas-Oates, Anal Biochem, 2008, 374, 325-334.
  • Analysis of carbohydrates in Lupinus albus stems on imposition of water deficit, using porous graphitic carbon liquid chromatography-electrospray ionization mass spectrometry.
    C Antonio, C Pinheiro, M M Chaves, C P Ricardo, M F Ortuno and J Thomas-Oates, J Chromatrogr A, 2008 1187, 111-118.
  • Hydrophilic interaction chromatography/electrospray mass spectrometry analysis of carbohydrate-related metabolites from Arabidopsis thaliana leaf tissue.
    C Antonio, T Larson, A Gilday, I Graham, E Bergström and J Thomas-Oates, Rapid Commun Mass Spectrom, 2008, 22, 1399-1407.
  • Comparing the survival of osteocalcin and mtDNA in archaeological bone from four European sites.
    M Buckley,C Anderung, K Penkman, B J Raney, A Götherström, J Thomas-Oates and M Collins, J Archaeol Sci, 2008, 35, 1756-1764.

2007

  • A study of the localisation of water soluble carbohydrates in wheat stems using imaging matrix-assisted laser desorption ionisation mass spectrometry.
    S Robinson, K Warburton, M Seymour, M Clench and J. Thomas-Oates, New Phytol, 2007, 173, 438–444
  • NopM and NopD Are Rhizobial Nodulation Outer Proteins: Identification Using LC-MALDI and LC-ESI with a monolithic capillary column.
    J A Rodrigues, F J López-Baena, J M Ollero, M del R Vinardell, R A Espuny, J E Bellogín, J R Ruiz-Sainz, D Thomas and J Sumpton, J Ault, J Thomas-Oates, J Proteome Res, 2007, 6, 1029-1037.
  • Rapid screening of underivatised oligosaccharides extracted from the stems of Triticum aestivum using porous graphitised carbon liquid chromatography-mass spectrometry.
    S Robinson, E T Bergström, M P Seymour and J E Thomas-Oates, Anal Chem, 2007, 79, 2437-2445.
  • The membrane lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 when grown under acidic conditions and its presence confers increased resistance to polymyxin B.
    C Sohlenkamp, K A Galindo-Lagunas, Z Guan, P Vinuesa, S Robinson, J Thomas-Oates, C R H Raetz and O Geiger, Mol Plant-Microbe Interact, 2007, 20, 1421-1430.
  • LC-MS-based method for the analysis of glycolytic intermediates and sugar phosphates from plant tissues.
    C Antonio, T Larson, A Gilday, I Graham, E Bergström and J Thomas-Oates, J Chromatogr A, 2007, 1172, 170-178.
  • The Chemical Preparation of an Isotopically Enriched Superoxide Dismutase and its Characterization as a Standard for Species-Specific Isotope Dilution Analysis in HPLC Inductively Coupled Plasma Mass Spectrometry.
    C L Deitrich, A Raab, B Pioselli, J E Thomas-Oates and J Feldmann, Anal Chem, 2007, 79, 8381-8390.
  • Cell protective antioxidants from the root bark of Lannea velutina A. Rich., a Malian medicinal plant.
    A Maiga, K E Malterud, G H Mathisen, R E Paulsen, J Thomas-Oates, E Bergström, L Reubsaet, D Diallo and B S Paulsen, J Med Plant Res , 2007, 1, 66-79.
  • Hydrophilic Interaction Chromatography for Mass Spectrometric Metabonomic Studies of Urine.
    S Cubbon, T Bradbury, J Wilson and J Thomas-Oates, Anal Chem, 2007, 79, 8911-8918.
  • Build your own spectrophotometer.
    S J Tavener, and J E Thomas-Oates, Education in Chemistry, 2007, 44, 151-154.
  • Mass Spectrometry of Carbohydrates: Newer Aspects.
    J A Rodrigues, A M Taylor, D P Sumpton, J C Reynolds, R Pickford and J E Thomas-Oates, Adv Carbohydr  Chem Biochem, 2007, 61, 59-141.

2006

  • Capillary Electrophoresis-Mass Spectrometry characterisation of secondary metabolites from the anti-hyperglycaemic plant Genista tenera.
    E L Edwards, J A Rodrigues, J Ferreira, D M Goodall, A P Rauter, J Justino and J Thomas-Oates, Electrophoresis, 2006, 27, 2164-2170.
  • Mass Spectrometric Profiling of O-Linked Glycans released directly from Glycoproteins in Gels using In-Gel Reductive β-Elimination.
    A M Taylor, O Holst and J Thomas-Oates, Proteomics, 2006, 6, 2936-2946.
  • Structural determination of the Nod factors produced by Rhizobium gallicum bv. gallicum R602.
    A M Gil Serrano, M E Soria-Díaz, M A Rodriguez-Carvajal, P Tejero-Mateo, J L Espartero, B Moron, C Sousa, M Megías and J Thomas-Oates, FEMS Microbiol Lett, 2006, 255, 164-173.
  • Biocontrol of avocado Dematophora root rot by antagonistic Pseudomonas fluorescens PCL1606 correlates with the production of 2-hexyl 5-propyl resorcinol.
    F M Cazorla, S B Duckett, E T Bergström, S Noreen, R Odijk, B J J Lugtenberg,  J E Thomas-Oates and G V Bloemberg, Mol Plant-Microbe Interact, 2006, 19, 418-428.
  • The production of species-specific highly unsaturated fatty acyl-containing LCOs from Rhizobium leguminosarum bv. trifolii is stringently regulated by nodD and involves the nodRL genes.
    H R M Schlaman, M M A Olsthoorn, M Harteveld, L Dörner, M A Djordjevic, J E Thomas-Oates and H P Spaink (2006) , Mol Plant-Microbe Interact, 2006, 19, 215-226.
  • Structures and structure-activity relationships of three mitogenic and complement fixing pectic arabinogalactans from the Malian anti-ulcer plants Cochlospermum tinctorium A. Rich. and Vernonia kotschyana Sch. Bip. ex Walp.
    C. Sogn Nergard, H. Kiyohara, J. C. Reynolds, J.E. Thomas-Oates, T. Matsumoto, H. Yamada, T. Patil, D. Petersen, T.E. Michaelsen, D. Diallo and B. Smestad Paulsen, Biomacromolecules, 2006 7, 71-79.
  • Jane Thomas-Oates profile.
    Analyst, 2006, 131, 22-23.

2005

  • Hyphenating liquid phase separation techniques with mass spectrometry: on-line or off-line?
    E Edwards and J Thomas-Oates Analyst, 2005, 130, 13-17.
  • The First μ6-Peroxide Transition-metal Complex: [Ni8(L)12(O2)]2+.
    E J Brown, A-K Duhme-Klair, M I Elliott, J E Thomas-Oates, P L Timmins and P H Walton, Angew Chem Int Ed, 2005, 44, 1392-1395.
  • Osteocalcin protein sequence of Neanderthal, modern human, chimpanzee and gorilla.
    C M Nielsen-Marsh, M P Richards, J E Thomas-Oates, E Trinkaus, P B Pettitt, I Karavanić, H Poinar and M J Collins, Proc Natl Acad Sci, USA, 2005, 102, 4409-4413.
  • Phosphorus–free membrane lipids of Sinorhizobium meliloti are not required for the symbiosis with alfalfa but contribute to increased cell yields under phosphorus-limiting conditions of growth.
    I M López-Lara, J-L Gao, M J Soto, A Solares-Pérez, B Weissenmayer, C Sohlenkamp, G P Verroios, J Thomas-Oates and O Geiger, Mol Plant-Microbe Interact, 2005, 18, 973-982.
  • Low pH changes the profile of nodulation factors produced by Rhizobium tropici CIAT899.
    B Morón, M E Soria-Díaz, J R Ault, G Verroios, S Noreen, D N Rodríguez-Navarro, A Gil-Serrano, J Thomas-Oates, M Megías and C Sousa, Chem Biol, 2005, 12, 1029-1040.
  • Characterisation and proposed origin of mass spectrometric ions observed 30 Th above the ionised molecules of per-O-methylated carbohydrates.
    S Robinson, A Routledge and J Thomas-Oates, Rapid Commun Mass Spectrom, 2005, 19, 3581-3688.
  • Structural Analysis of the Capsular Polysaccharide from Sinorhizobium fredii HWG35.
    M.A. Rodríguez-Carvajal, J.A. Rodrigues, M.E. Soria-Díaz, P. Tejero-Mateo, A. Buendía-Clavería, R. Gutiérrez, J.E. Ruiz-Sainz, J. Thomas-Oates and A. M. Gil-Serrano, Biomacromolecules, 2005, 6, 1448-1456.
  • Structure-immunomodulating activity relationships of a pectic arabinogalactan from Vernonia kotschyana Sch. Bip. ex Walp.
    C. Sogn Nergard, H. Kiyohara, J.C. Reynolds, J.E. Thomas-Oates, T. Matsumoto, H. Yamada, T.E. Michaelsen, D. Diallo and B. Smestad Paulsen, Carbohydr. Res., 2005 340, 1789-1801.
  • "A Guide for the Production and Quality Control of Legume Inoculants"
    D. N. Rodríguez-Navarro, S. S. Yang, C. Guo, J. E. Ruiz-Sainz, F. Temprano, Z. Gu, W. Wei, L. Wang, J. R. Ault, D. P. Sumpton, J. Rodrigues, J. Thomas-Oates, J. Zhou, I. B. M., C. L. Díaz and H. P. Spaink,, publisher: Instituut Biologie, Leiden, The Netherlands, 2005.

2004

  • Characterization of two Pseudomonas putida lipopeptide biosurfactants, Putisolvin I and II, which inhibit biofilm formation and destroy existing biofilms.
    I Kuiper,  E L Lagendijk, R Pickford, J P Derrick, G E Lamers, J E Thomas-Oates, B J Lugtenberg and G V Bloemberg, Mol Microbiol, 2004, 51, 97-113.
  • 2-Dimethylarsinothioyl acetic acid identified in a biological sample.  The first occurrence of a mammalian arsinothioyl metabolite.
    H R Hansen, R Pickford, J Thomas-Oates, M Jaspars and J Feldmann Angew Chem Int Ed, 2004, 43, 337–340.
  • Identification of a gene required for the formation of lyso-ornithine lipid, an intermediate in the biosynthesis of ornithine-containing lipids.
    J-L Gao, B Weissenmayer, A Taylor, J Thomas-Oates, I M López-Lara, and O Geiger, Mol Microbiol, 2004, 53, 1757-1770.
  • Acacia senegal and Prosopis chilensis nodulating rhizobia Sinorhizobium kostiense HAMBI 2362 and S. arboris HAMBI 2361 produce tetra- and pentameric LCOs that are N-methylated, O-6-carbamoylated and partially sulfated.
    P. Nowak , L. Soupas, J. Thomas-Oates and K. Lindström, Carbohydr. Res., 2004, 339, 1061-1067.
  • Effects of Pseudomonas putida modified to produce phenazine-1-carboxylic acid and 2,4-diacetylphloroglucinol on the microflora of field grown wheat.
    P.A.H.M. Bakker,  D.C.M. Glandorf, M. Viebahn, T. W.M. Ouwens, E. Smit,P. Leeflang, K. Wernars, L. S. Thomashow and J. E. Thomas-Oates. L. C. van Loon,Antonie van Leeuwenhoek, 2002, 81, 617–624.

2003

  • Structural determination of the lipo-chitin oligosaccharide nodulation signals produced by Rhizobium giardinii bv. giardinii H152.
    M E Soria-Diaz, P Tejero-Mateo, J L Espartero, M A Rodriguez-Carvajal, B Moron, C Sousa, M Megias, N Amarger, J Thomas-Oates and A M Gil-Serrano, Carbohydr Res, 2003, 338 ,  237-250.
  • The role of Nod factor substituents in actin cytoskeleton rearrangements in Phaseolus vulgaris.
    L Cárdenas, J E Thomas-Oates, N. Nava, I.M. López-Lara, P.K. Hepler and C. Quinto, Mol Plant-Microbe Interact, 2003, 16, 326-334.
  • A catalogue of molecular, physiological and symbiotic properties of soybean-nodulating rhizobial strains from different soybean cropping areas of China.
    J     Thomas-Oates, J Bereszczak, E Edwards, A Gill, S Noreen, J C Zhou, M Z Chen, L H Miao, F L Xie, J K Yang, Q Zhou, S S Yang, X H Li, L Wang, H P Spaink, H R M Schlaman, M Harteveld, C L Díaz, A A N van Brussel, M Camacho, D N Rodríguez, C Santamaría, F Temprano J M Acebes, R A Bellogin, A M Buendía, M T Cubo, M R Espuny, A M Gil, R Gutiérrez, A Hidalgo, F J López-Baena, N Madinabeitia, C Medina, F J Ollero, J M Vinardell and J E Ruiz-Sainz, Systematic Appl Microbiol, 2003, 26, 453-465.
  • Alfalfa nodulation by S. fredii does not require sulfated Nod-factors.
    S     Noreen, H RM Schlaman, R A Bellogín, A M Buendía-Clavería, M R Espuny, M Harteveld, C Medina, F J Ollero, M M A Olsthoorn, M E Soria-Diaz, H P Spaink, F Temprano, J Thomas-Oates, J M Vinardell, S S Yang, H Zhang and J E Ruiz-Sainz, Func Plant Biol 2003, 30, 1219-1232.

2002

  • Arsenosugar identification in seaweed extracts using high-performance liquid chromatography/electrospray ion trap mass spectrometry.
    M Miguens-Rodriguez, R Pickford, J E Thomas-Oates and S A Pergantis, Rapid Commun. Mass Spectrom, 2002 16 , 323-331.
  • Application of the high mass accuracy capabilities of FT-ICR-MS and Q-TOFMS to the characterisation of arsenic compounds in complex biological matrices.
    R Pickford, M Miguens-Rodriguez, S Afzaal, P Spier, S A Pergantis and J E Thomas-Oates, J Anal At Spectrom, 2002, 17, 173-176.

2001

  • Effect of pH and soybean cultivars on the quantitative analyses of soybean rhizobia populations.
    S S Yang, R Bellogin, A Buendia, M Camacho, M Chen, T Cubo, A Daza, C L Díaz, M R Espuny, R Gutierrez, M Hartevelt, X H Li, M C C P Lyra, N Madinabeitia, C Medina, L Miao, F J Ollero, M M A Olsthoorn, D N Rodriguez, C Santamaria, H R M Schlaman, H P Spaink, F Temprano, J E Thomas-Oates, A A N Van Brussel, J M Vinardell, F Xie, J Yang, H Y Zhang, H Y Zhen, J Zhou and J E Ruiz Sainz, J Biotechnol, 2001, 91, 243-255.
  • Analysis of the pmsCEAB Gene Cluster Involved in Biosynthesis of Salicylic Acid and the Siderophore Pseudomonine in the Biocontrol Strain Pseudomonas fluorescens WCS374.
    J Mercado-Blanco, K M G M van der Drift, P Olsson, J E Thomas-Oates, L C van Loon and P A H M Bakker, J Bacteriol, 2001, 183 , 1909–1920.
  • Rhizobial NodL O-acetyl transferase and NodS N-methyl transferase functionally interfere in the production of modified Nod factors.
    I M López-Lara, D Kafetzopoulos, H P Spaink and J E Thomas-Oates, J Bacteriol, 2001, 183 , 3408-3416.
  • Introduction of the phzH gene of Pseudomonas  chlororaphis PCL1391 extends the range of biocontrol ability  of phenazine-1-carboxylic acid-producing Pseudomonas  spp. strains.
    T F C Chin-A-Woeng, J E Thomas-Oates, B J J Lugtenberg and G V Bloemberg, Mol Plant-Microbe Interact, 2001, 14, 1006-1015.
  • Phenazine-1-carboxamide production in the biocontrol strain  Pseudomonas chlororaphis PCL1391 is regulated by multiple  factors secreted into the growth medium.
    T F C Chin-A-Woeng, D. van den Broek, G. de  Voer, K M G M van der Drift, S Tuinman, J E Thomas-Oates, B J J Lugtenberg and G V Bloemberg, Mol Plant-Microbe Interact, 2001, 14, 969-979.
  • Increased uptake of putrescine in the rhizosphere inhibits competitive root colonization by Pseudomonas fluorescens  strain WCS365.
    I Kuiper, G V Bloemberg, S Noreen, J E Thomas-Oates and B J J Lugtenberg, Mol Plant-Microbe Interact, 2001, 14, 1096-1104.
  • The occurrence of internal (1->5)-linked arabinofuranose and arabinopyranose residues in arabinogalactan side chains from soybean pectic substances.
    M.M.H. Huisman, L.P. Brüll, J.E. Thomas-Oates, J. Haverkamp, H.A. Scholsand A.G.J. Voragen, Carbohydr. Res., 2001, 330, 103-114.
  • Effect of Genetically Modified Pseudomonas putida WCS358r on the Fungal Rhizosphere Microflora of Field-Grown Wheat.
    D.C.M. Glandorf, P. Verheggen, T. Jansen, J.-W. Jorritsma, E. Smit P. Leeflang, K. Wernars, L.S. Thomashow, E. Laureijs, J.E. Thomas-Oates, P.A.H.M. Bakker, and L.C. Van Loon, Appl. Environ. Microbiol., 2001, 67,  3371-3378.