Dr Seishi Shimizu Publications

2011 2010 2009 2008 2007 2006 2005 2004 2002 2001

2011

  • The effect of urea on hydrophobic hydration: Preferential interaction and the enthalpy of transfer.
    S. Shimizu, Chem Phys Lett, 2011, 517, 76-79.
  • Molecular Origin of the Cosolvent-Induced Changes in the Thermal Stability of Proteins.
    S Shimizu, Chem Phys Lett, 2011, 420, 156-168.

2010

  • Soluble, folded and active subtilsin in a protic ionic liquid.
    F Falcioni, H R Housden, Z Ling, S Shimizu, A J Walker and N C Bruce, Chem Comm, 2010,  46, 749-51.
  • Hydrophilicity, the major determining factor influencing the solvation environment of protic ionic liquids.
    L Wright, M W Sanders, L Tate, G Fairless, L Crowhurst, N C Bruce, A J Walker, G A Hembury and S Shimizu, Phys Chem Chem Phys, 2010, 12, 9063-9066.

2009

  • Unexpected preferential dehydration of artemisinin in ionic liquids.
    M W Sanders, L Wright, L Tate, G Fairless, L Crowhurst, N C Bruce, A J Walker, G A Hembury and S Shimizu, J Phys Chem A, 2009, 113, 10143-10145.

2008

  • Water, life, and hydrogen bonding.
    S Shimizu, Biological Sciences Review, 2008, 21, 18-20.

2007

  • Water and Life.
    S Shimizu, Chemistry Review, 2007, 16, 42-45.

2006

  • The Hofmeister effect and protein-salt interactions.
    S Shimizu, W L McLaren and N Matubayasi, J Chem Phys, 2006, 129 234905.
  • A statistical-mechanical approach to the cosolvent effects on protein stability (Review - Japanese).
    S Shimizu, Ensemble, 2006, 8, 29 - 32.
  • Preferential hydration of proteins: A Kirkwood-Buff approach.
    S Shimizu and N Matubayasi, Chem Phys Lett, 2006, 420, 518 - 522.
  • Thermodynamic basis for specificity within a family of conserved, cross-reactive protein-protein complexes.
    A H Keeble, N Kirkpatrick, S Shimizu and C Kleanthous Biochemistry, 2006, 45, 3243 - 3245.

2005

  • Comment on "Molecular Origin of Anticooperativity in Hydrophobic Association".
    S Shimizu, M S Moghaddam and H S Chan, J Phys Chem B, 2005, 109, 21220 - 21221.
  • Temperature dependence of three-body hydrophobic interactions: Potential of mean force, enthalpy, entropy, heat capacity, and nonadditivity.
    M S Moghaddam, S Shimizu and H S Chan, J Am Chem Soc, 2005, 127, 303 - 316.

2004

  • The Kirkwood-Buff theory and the effect of cosolvents on biochemical reactions.
    S Shimizu and C L Boon, J Chem Phys, 2004, 121, 9147 - 9155.
  • Preferential hydration and the exclusion of cosolvents from protein surfaces.
    S Shimizu and D J Smith, J Chem Phys, 2004, 121, 1148 - 1154.
  • The hydrophobic effect and the excess free energy of solvation.
    S Shimizu, Chem Phys Lett, 2004, 392, 456 - 459.
  • Estimation of excess solvation numbers of water from preferential interaction and volumetric experiments.
    S Shimizu, J Chem Phys, 2004, 120, 4989 - 4990.
  • Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.
    S Shimizu, Proc Natl Acad Sci (USA), 2004, 101, 1195 – 1199.
  • Cooperativity Principles in Protein Folding.
    H S Chan, S Shimizu and H Kaya, Methods Enzymol, 2004, 380,350 - 379.

2002

  • Origins of Protein Denatured States Compactness and Hydrophobic Clustering in Aqueous Urea: Inferences from Nonpolar Potentials of Mean Force.
    S Shimizu and H S Chan, Proteins: Struct Funct Genet, 2002, 49, 560-566.
  • Anti-Cooperativity and Cooperativity in Hydrophobic Interactions: Three-Body Free Energy Landscape and Comparison with Implicit-Solvent Potential Functions for Proteins.
    S Shimizu and H S Chan, Proteins: Struct Funct Genet, 2002, 48, 15-30.
  • Reply to "Comment on 'Anti-Cooperativity in Hydrophobic Interactions: A Simulation Study of Spatial Dependence of Three-Body Effects and Beyond' [J Chem Phys, 2002, 116, 2665].
    S Shimizu and H S Chan, J Chem Phys, 2002, 116, 2668-2669.
  • Computational Methods for Protein Folding: Scaling a Hierarchy of Complexities.
    H S Chan, H Kaya and S Shimizu, in "Current Topics in Computational Biology", eds. T Jiang, T Smith, Y Yu, M Q Zhang, MIT Press, Boston, USA, 2002, 403-447.
  • Molecular Life of Proteins: Folding and Stability.
    T Ooi and S Shimizu, in "Recent Research Developments in Protein Folding, Stability, and Design", eds. M M Gromiha and S Selvaraj, Research Signpost, Kerala, India, 2001, 243-264.

2001

  • Statistical Mechanics of Solvophobic Effects: Additive and Cooperative Effects.
    S Shimizu and H S Chan, J Chem Phys, 2001, 115, 3424-3431.
  • Anti-Cooperativity in Hydrophobic Interactions: A Simulation Study of Spatial Dependence of Three-Body Effects and Beyond.
    S Shimizu and H S Chan, J Chem Phys, 2001, 115, 1414-1421.
  • Configuration-Dependent Heat Capacity of Pairwise Hydrophobic Interactions.
    S Shimizu and H S Chan, J Am Chem Soc, 2001, 121, 2083-2084.